CF835063

Overview
NameCF835063
Unique NameCF835063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3187 contig Csv1_Contig3187:34..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.440e-29
Identity = 60/161 (37.27%), Postives = 95/161 (59.01%), Query Frame = 1
Query:  181 STPARKRLMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 621
            S+ + + L +  K +Q++PP G S G   D +I  W  +I GP+DT ++GG F  TL F +DYP  PP ++F + ++HPN++ +G +C+ IL               +W P++    IL S+ S+L  PN  SPAN +AA+ F EN +E+ +RVR +V +S
Sbjct:    3 SSASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRS 163          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.440e-29
Identity = 63/162 (38.89%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  178 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 621
            M+  A KRLM ++K+L  +PP GI   P  + N   W A+I GP+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++M+ +++ ++ +  ++IV++S
Sbjct:    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.440e-29
Identity = 63/162 (38.89%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  178 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 621
            M+  A KRLM ++K+L  +PP GI   P  + N   W A+I GP+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++M+ +++ ++ +  ++IV++S
Sbjct:    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.440e-29
Identity = 63/162 (38.89%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  178 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 621
            M+  A KRLM ++K+L  +PP GI   P  + N   W A+I GP+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++M+ +++ ++ +  ++IV++S
Sbjct:    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.440e-29
Identity = 63/162 (38.89%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  178 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 621
            M+  A KRLM ++K+L  +PP GI   P  + N   W A+I GP+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++M+ +++ ++ +  ++IV++S
Sbjct:    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQIVQKS 162          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.874e-28
Identity = 58/137 (42.34%), Postives = 87/137 (63.50%), Query Frame = 1
Query:  196 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 606
            KR++++ +RL  +P  GIS  P  +N   +   I GP D+P++GG F L L  T+DYP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N++E   R RE
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARARE 142          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.196e-28
Identity = 60/156 (38.46%), Postives = 94/156 (60.26%), Query Frame = 1
Query:  178 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 603
            MS  A+KRL+++ ++L +D P GI   P+ +NNI +W+ +I GP DTP+  G F   L+F +DYP  PP + F   + HPNIY +G +C+ IL             + +WSP+  V  IL S+ S+L +PN  S AN +A  ++ +N+ E+ R+V+
Sbjct:    1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.196e-28
Identity = 60/142 (42.25%), Postives = 89/142 (62.68%), Query Frame = 1
Query:  196 KRLMRDFKRLQQDPPAGISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 618
            KRL  +  +L       IS  P  DN++  W   I GP DTP+ G  FK++L+F ++YP  PP ++F+S M+HPN+   G+ICLDIL+ +WS +Y+V  IL S+QSLL +PN  SP N+ AA ++  +  EY ++V    E+
Sbjct:   11 KRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEYRKKVLACYEE 152          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.196e-28
Identity = 64/145 (44.14%), Postives = 92/145 (63.45%), Query Frame = 1
Query:  196 KRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR----RVREIVE 615
            KRL  +   L      GIS  P  D+N++ W   I GP DT ++G  FK+++ F  +YP  PPT+ F S M+HPN+   G+ICLDIL+++WS +Y+V  IL S+QSLL +PN  SP N++AA ++S++  EY R    R +EI E
Sbjct:   31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRLLMQRYKEIDE 175          
BLAST of CF835063 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.175e-28
Identity = 61/137 (44.53%), Postives = 87/137 (63.50%), Query Frame = 1
Query:  196 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 606
            KRL ++ + L      GI+  P  +N+  W A + GP DT ++   +KLTL+F  DYP KPP V+F +  +HPN+   G+ICLDIL+  W+  YDV  IL S+QSLL +PN  SP N++AA M+S N+ EY + + E
Sbjct:   33 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHE 168          
The following BLAST results are available for this feature:
BLAST of CF835063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
UBC15_SCHPO6.440e-2937.27Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UB2G2_PONAB6.440e-2938.89Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE6.440e-2938.89Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN6.440e-2938.89Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN6.440e-2938.89Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBE2N_DICDI1.874e-2842.34Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC7_YEAST3.196e-2838.46Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC11_YEAST3.196e-2842.25Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC11_SCHPO3.196e-2844.14Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBE2C_SPISO4.175e-2844.53Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835063 ID=CF835063; Name=CF835063; organism=Citrus sinensis; type=EST; length=789bp
TCCACTTAAGCCTTTTTCTTCTTTTCTTTCGTTGTATAAATTCAATCAAT
TCCCTCGCTGAAACTTGAAGCCGCTTAGCTTTCCCTCTTGTTTACCAGTT
TCTCGTACCGTCTCCTTTCAGGACGACGACTTGGATTTTTCTTTTGATTG
AATTTCTGAAGTTTGTGGGTGGTGACGATGTCGACACCTGCAAGGAAGAG
GCTGATGAGAGATTTTAAAAGGTTGCAGCAAGACCCGCCTGCAGGCATCA
GTGGGGCTCCCCAAGACAACAATATTATGCTCTGGAATGCTGTGATATTT
GGTCCTGATGATACGCCATGGGATGGAGGTACGTTCAAGTTGACCCTTCA
GTTTACGGAGGATTATCCAAACAAACCGCCAACTGTGCGATTTGTTTCTA
GGATGTTTCATCCAAATATATATGCCGATGGAAGTATTTGTCTGGATATT
TTGCAAAATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACATC
TATTCAGTCATTGCTCTGTGATCCCAACCCAAATTCTCCTGCAAATTCAG
AAGCTGCTCGGATGTTTAGTGAGAACAAGCGTGAATACAACAGAAGAGTA
AGGGAAATAGTGGAACAGAGCTGGACAGCAGATTAACTTCATTCTCATTC
ACTGCCTCATTAAAAACCAAGCAGAGTTGTCTTGCTACCCCTCCCAAATA
TGAATGTTAAAAGCTATTTAATCCATATTATAATATAGTACTACTTTCAG
TATTGTGTGCCTTTGAGCTTGCGTACAATAGAATTTTAT
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