CF835078

Overview
NameCF835078
Unique NameCF835078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: GRS17_ARATH (Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana GN=GRXS17 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 29/84 (34.52%), Postives = 55/84 (65.48%), Query Frame = -3
Query:  145 VILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 396
            V+L+F A+WC   + +  +F++LA+ + +  F +V+ +E  +++  +++ +VP F F K+GK VD + GAD S+L  K+ + AG
Sbjct:   24 VVLHFWASWCDASKQMDQVFSHLATDFPRAHFFRVEAEEHPEISEAYSVAAVPYFVFFKDGKTVDTLEGADPSSLANKVGKVAG 107          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = -3
Query:  187 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA 396
            V++ F A WCGPCR I+P+   LA +Y  K+   KV+ D++ ++AT + I S+PT    KNG++ + V+GA
Sbjct:   86 VLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGA 156          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.256e-11
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = -3
Query:  160 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKI 450
            S SE++TK+  +      V++ F A WCGPCR I P+   LA  +  K  F K++ DE+ + A R+ I SVPT    K G++ D ++GA  +  LE+ I
Sbjct:   92 SDSEWQTKVLESDVP---VLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTI 187          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.256e-11
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = -3
Query:  190 FTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 384
            F ATWCGPC+ I+P+   LA  Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:   24 FWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVG 89          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.256e-11
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = -3
Query:  169 VILYFTATWCGPCRFISPLFTNLASK-YTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALE 396
            V++ F A WCGPC+ + P    + +K + KVV  KVDID+  D+A  + + +VPT   +KNG  VDK VG  D+  LE
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLE 158          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = -3
Query:  169 VILYFTATWCGPCRFISPLFTNLASK-YTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALE 396
            V++ F A WCGPC+ + P    + +K + KVV  KVDID+  D+A  + + +VPT   +KNG  VDK VG  D+  LE
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLE 158          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_MYCGE (Thioredoxin OS=Mycoplasma genitalium GN=trxA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = -3
Query:  190 ALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 408
            A + VI+ F A WCGPC+  SP F   A +++   F+KV++D+  D+A  +NI S+PT    +NG E  + +G
Sbjct:   17 AKKNVIVDFWAAWCGPCKLTSPEFQKAADEFSDAQFVKVNVDDHTDIAAAYNITSLPTIVVFENGVEKKRAIG 89          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO2_DICDI (Thioredoxin-2 (Fragment) OS=Dictyostelium discoideum GN=trxB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  199 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDK 456
            IH +S  E  L+   +A RLVI  F+A WCGPCR ISP+F  L++++    F+ VDID+         I SVPTF+F +NG +V +
Sbjct:    5 IHISSNEE--LDKHLQAERLVI-DFSAAWCGPCRAISPVFEKLSNEFVTFTFVHVDIDKLSGHPIVKEIRSVPTFYFYRNGAKVSE 87          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = -3
Query:  145 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQHAG 396
            V++ F A WCGPCR I+P+   LA  Y  K+   KV+ D++ +VA+ + I S+PT    K G++ + V+GA  KS L   I ++ G
Sbjct:   80 VLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKYIG 165          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_TREPA (Thioredoxin OS=Treponema pallidum GN=trxA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = -3
Query:  148 LVILYFTATWCGPCRFISPLFTNLASKY-TKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALERKIAQHA 399
            LVI+ F A WCG C+ + P+   + S+  + VV  K+++D+ +D+A  +N+ S+PT    K+GKEVD+ +G  DKS +   I ++A
Sbjct:   20 LVIVDFWAPWCGSCKMLGPVLEEVESEVGSGVVIGKLNVDDDQDLAVEFNVASIPTLIVFKDGKEVDRSIGFVDKSKILTLIQKNA 105          
The following BLAST results are available for this feature:
BLAST of CF835078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GRS17_ARATH2.495e-1134.52Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana... [more]
TRXM_ORYSJ3.259e-1142.25Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXM4_ARATH4.256e-1138.38Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
THIO_STAHJ4.256e-1146.97Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIOM_HUMAN4.256e-1143.59Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIOM_BOVIN5.559e-1143.59Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
THIO_MYCGE7.260e-1139.73Thioredoxin OS=Mycoplasma genitalium GN=trxA PE=3 ... [more]
THIO2_DICDI7.260e-1144.19Thioredoxin-2 (Fragment) OS=Dictyostelium discoide... [more]
TRXM_MAIZE9.482e-1139.53Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
THIO_TREPA9.482e-1138.37Thioredoxin OS=Treponema pallidum GN=trxA PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06K03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835078 ID=CF835078; Name=CF835078; organism=Citrus sinensis; type=EST; length=566bp
TTTTTTTTTTTTTTTGGAGCAAGTTATTTTTATTCAATACTGAAATCTTT
ATCAGACATTATTTGCTTGGCAAACAAATGGGTAGGAAAGGCTTGCAAGC
AGAGATTACTCTAAAGTTCTCATTATTCAGGAGTGGTTTTACTGGCCAGC
ATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTATCAGCCCCGACAACCT
TGTCAACTTCCTTACCATTCTTTATGAAGAAAAAGGTGGGAACAGAACCA
ATATTCCAGCGTGTAGCTACATCTCTTGCCTCATCTATGTCAACTTTCAA
GAAAACAACCTTCGTGTATTTTGAGGCTAAGTTTGTAAAAAGAGGAGAAA
TGAAACGGCAGGGCCCGCACCATGTTGCAGTAAAGTACAGAATCACCAGG
CGCAATGCTCTAGTAGCAGCATTCAACTTAGTTTCAAATTCACTAGCTGA
GTGAATACCCATTACTTGCCCATCCCTTAAACCAGACAAAGCTTCTCGAT
CGGCTCCAGCTTGTTTTCTTTGCCTCTCACGTTCAAAATTTTTTAGCTCC
CTTTCTTTACGCAGCC
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