CF835078

Overview
NameCF835078
Unique NameCF835078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.252e-20
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = -3
Query:  160 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 465
            V  I S S F+  LN+A    +LV++ F+ATWCGPC+ I P F +L+ KY+ VVFL+VD+D+ +DVA    +  +PTF F K G++VD+  GA+K  LE  I
Sbjct:    2 VKQIESKSAFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 6.552e-20
Identity = 39/105 (37.14%), Postives = 71/105 (67.62%), Query Frame = -3
Query:  154 QVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 468
            +V+   S++ ++   N    + +L+++ F+A+WCGPCR I P    +A K+  V F+K+D+DE  DVA  +N+ ++PTF  +K GKE+++++GA K  LE+K+++
Sbjct:   26 RVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 4.247e-19
Identity = 44/105 (41.90%), Postives = 69/105 (65.71%), Query Frame = -3
Query:  151 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 465
            V  + SASE+++ L +  +   LV++ F ATWCGPC+ I+P+    A +Y+   F K+D+DE  DVA +  + S+PT  F K GKEV +VVGA+ +A+++ IA +
Sbjct:    2 VTQLKSASEYDSALASGDK---LVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASN 103          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.546e-19
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = -3
Query:  160 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 465
            V  I S   F+  LN+A    +LV++ F+ATWCGPC+ I P F +L+ KY+ VVFL+VD+D+ +DVA    +  +PTF F K G++V +  GA+K  LE  I
Sbjct:    2 VKQIESKYAFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATI 101          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 5.546e-19
Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = -3
Query:  160 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 465
            V  I S   F+  LN+A    +LV++ F+ATWCGPC+ I P F +L+ KY+ VVFL+VD+D+ +DVA+   +  +PTF F K G++V +  GA+K  LE  I
Sbjct:    2 VKQIESKYAFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.546e-19
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = -3
Query:  151 LNAATRALR-----LVILYFTATWCGPCRFISPLFTNLASK--YTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 426
            LNA + AL+     LV++ FTATWCGPC+ I P+F  L+    Y  VVFLKVD+D+A DV++  +I  +PTF F KNG+++D+  GA++  L++KI  H
Sbjct:    8 LNAFSAALKNAGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 7.244e-19
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = -3
Query:  160 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 465
            V  I S   F+  LN+A    +LV++ F+ATWCGPC+ I P F +L+ KY+ VVFL+VD+D+ +DVA    +  +PTF F K G++V +  GA+K  LE  I
Sbjct:    2 VKQIESKYAFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 9.460e-19
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = -3
Query:  148 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 456
            I S   F+  L AA    +LV++ F+ATWCGPC+ I P F +L  KY+ VVFL+VD+D+ +DVA    +  +PTF F K G++V +  GA+K  LE  I ++A
Sbjct:    5 IESKEAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA 105          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 9.460e-19
Identity = 45/102 (44.12%), Postives = 68/102 (66.67%), Query Frame = -3
Query:  160 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 465
            V  I S + F+  L+AA    +LV++ F+ATWCGPC+ I P F +L+ KY+ V+FL+VD+D+ +DVA+   +  +PTF F K G++V +  GA+K  LE  I
Sbjct:    2 VKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.236e-18
Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = -3
Query:  160 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 465
            V  I S   F+  L+AA    +LV++ F+ATWCGPC+ I P F +L+ KY+ VVFL+VD+D+ +DVA+   +  +PTF F K G++V +  GA+K  LE  I
Sbjct:    2 VKQIDSKDAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of CF835078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
THIO_HORSE2.252e-2047.06Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
TRXH2_ARATH6.552e-2037.14Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
TRX2_YEAST4.247e-1941.90Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO_SHEEP5.546e-1945.10Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_PIG5.546e-1945.10Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_ICTPU5.546e-1947.47Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
THIO_BOVIN7.244e-1945.10Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_MOUSE9.460e-1944.66Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_HUMAN9.460e-1944.12Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_CALJA1.236e-1845.10Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06K03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835078 ID=CF835078; Name=CF835078; organism=Citrus sinensis; type=EST; length=566bp
TTTTTTTTTTTTTTTGGAGCAAGTTATTTTTATTCAATACTGAAATCTTT
ATCAGACATTATTTGCTTGGCAAACAAATGGGTAGGAAAGGCTTGCAAGC
AGAGATTACTCTAAAGTTCTCATTATTCAGGAGTGGTTTTACTGGCCAGC
ATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTATCAGCCCCGACAACCT
TGTCAACTTCCTTACCATTCTTTATGAAGAAAAAGGTGGGAACAGAACCA
ATATTCCAGCGTGTAGCTACATCTCTTGCCTCATCTATGTCAACTTTCAA
GAAAACAACCTTCGTGTATTTTGAGGCTAAGTTTGTAAAAAGAGGAGAAA
TGAAACGGCAGGGCCCGCACCATGTTGCAGTAAAGTACAGAATCACCAGG
CGCAATGCTCTAGTAGCAGCATTCAACTTAGTTTCAAATTCACTAGCTGA
GTGAATACCCATTACTTGCCCATCCCTTAAACCAGACAAAGCTTCTCGAT
CGGCTCCAGCTTGTTTTCTTTGCCTCTCACGTTCAAAATTTTTTAGCTCC
CTTTCTTTACGCAGCC
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