CF835078

Overview
NameCF835078
Unique NameCF835078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1776 contig Csv1_Contig1776:634..1199. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.279e-15
Identity = 32/81 (39.51%), Postives = 57/81 (70.37%), Query Frame = -3
Query:  160 RLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 402
            +LV++ F ATWCGPC+ I+P F   ++ Y+   F+KVD+D+  ++A    + ++P+FF  KNG++++++VGA+ + LE  I
Sbjct:   19 KLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASI 99          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO5_DICDI (Putative thioredoxin-5 OS=Dictyostelium discoideum GN=trxE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.848e-15
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = -3
Query:  160 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNL--ASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 444
            SE+E +L  A  A    ++Y TATWCGPCR I+P+FTN+  A + +K+ F KVD+D  + +    ++  VPTF   +NG+E ++  GA+K ALE  +
Sbjct:    9 SEYEAELKNAPVA----VVYLTATWCGPCRAIAPVFTNISNAPENSKITFFKVDVDALKKLPVCESLQGVPTFIAYRNGEEQERFSGANKVALENMV 101          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.113e-14
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = -3
Query:  154 LRDGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 480
            L +G V  I    EFE  L  A    +LV + F+A WCGPCR + PLF +L+ K+  V+FL+VD ++   +     I  +PTF F KN ++V +  GA    LER I++
Sbjct:  407 LEEGLVRVIKDKEEFEEVLKDAGE--KLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.113e-14
Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  169 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALE 465
            V  I S +E++ K+  AT     V++ F ATWCGPC+ I+P    L+  +T + F KVD+DE  +VA    + ++PTF F K G+  ++V GA+ +A++
Sbjct:    3 VTPIKSVAEYKEKVTDATGP---VVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQ 98          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 35/103 (33.98%), Postives = 64/103 (62.14%), Query Frame = -3
Query:  160 QVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 468
            +V+ I SA  +   ++ A      ++ +FTA WC P  F++  F  LA  Y   +FL VD+DE ++VA++  + ++PTF F+K+G  +DK+VGA+   +++++
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 36/85 (42.35%), Postives = 58/85 (68.24%), Query Frame = -3
Query:  151 RLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEV-DKVVGADKSALERKIAQH 402
            +LV++ FTA+WCGPC+ I+P +  +A ++  V+F KVD+DE  + A    I ++PTF F K+GK + D V GA+++ L  KI ++
Sbjct:   21 KLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.016e-14
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = -3
Query:  160 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 456
            I S +EF+ K+     A   V++   ATWCGPC+ I+P     A  YT   F ++D+DE  +VA    I ++PTF   K+G++V  VVGA+  ALE  I
Sbjct:   10 ITSKAEFQEKV---LNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGI 105          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.163e-14
Identity = 37/88 (42.05%), Postives = 58/88 (65.91%), Query Frame = -3
Query:  148 ALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALERKIAQHA 408
            A  LV++ F A WCGPC+ ++P+  +L ++ + V+  KV+ID+    A ++ + S+PT    K+GKEVD+VVG  DK +L R I QH+
Sbjct:   15 ATGLVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQHS 102          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.197e-13
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = -3
Query:  160 TKLNAATRALRLV------ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 432
            TKL   T    L+      ++ F ATWCGPC+ + P  T L   Y  V F+K D+DE+ D+A    + ++PTF   K+G+ + K++GA+ +ALE+ I
Sbjct:   28 TKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGI 124          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.041e-13
Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = -3
Query:  151 LVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALERKIAQH 399
            LV++ F A WCGPC+ ++P+   LA++   V  LKVDID +   A ++++ S+PT    K+GKEV++ VG  DK +L + I++H
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKH 101          
The following BLAST results are available for this feature:
BLAST of CF835078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
TRX1_SCHPO1.279e-1539.51Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO5_DICDI2.848e-1542.27Putative thioredoxin-5 OS=Dictyostelium discoideum... [more]
TXND2_MOUSE4.113e-1439.45Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
THIO_PENCH4.113e-1438.38Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
TRXL4_ARATH5.372e-1433.98Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO_GEOCY5.372e-1442.35Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
THIO_EMENI7.016e-1440.40Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIO_CHLCV9.163e-1442.05Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
TRX3_YEAST1.197e-1338.14Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]
THIO_CHLTR2.041e-1341.67Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06K03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835078 ID=CF835078; Name=CF835078; organism=Citrus sinensis; type=EST; length=566bp
TTTTTTTTTTTTTTTGGAGCAAGTTATTTTTATTCAATACTGAAATCTTT
ATCAGACATTATTTGCTTGGCAAACAAATGGGTAGGAAAGGCTTGCAAGC
AGAGATTACTCTAAAGTTCTCATTATTCAGGAGTGGTTTTACTGGCCAGC
ATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTATCAGCCCCGACAACCT
TGTCAACTTCCTTACCATTCTTTATGAAGAAAAAGGTGGGAACAGAACCA
ATATTCCAGCGTGTAGCTACATCTCTTGCCTCATCTATGTCAACTTTCAA
GAAAACAACCTTCGTGTATTTTGAGGCTAAGTTTGTAAAAAGAGGAGAAA
TGAAACGGCAGGGCCCGCACCATGTTGCAGTAAAGTACAGAATCACCAGG
CGCAATGCTCTAGTAGCAGCATTCAACTTAGTTTCAAATTCACTAGCTGA
GTGAATACCCATTACTTGCCCATCCCTTAAACCAGACAAAGCTTCTCGAT
CGGCTCCAGCTTGTTTTCTTTGCCTCTCACGTTCAAAATTTTTTAGCTCC
CTTTCTTTACGCAGCC
back to top