CF835078

Overview
NameCF835078
Unique NameCF835078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1776 contig Csv1_Contig1776:634..1199. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 74.7146 bits (182), Expect = 3.482e-13
Identity = 38/100 (38.00%), Postives = 63/100 (63.00%), Query Frame = -3
Query:  145 FETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQHAG 438
            F+T++  + +A   V++ F A+WCGPC  + P+   LA  Y  K +  K+++DE  ++A ++ I S+PT   IK GK VD++VGA  K+ + +KI +H G
Sbjct:   12 FQTEILDSDKA---VLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEHIG 108          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO1_DROYA (Thioredoxin-1 OS=Drosophila yakuba GN=dhd PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 35/102 (34.31%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  154 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKY-TKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 456
            + + ++F  ++ AA    +L++L F A WCGPC+ +     +LA KY TK V LK+D+D+  ++  R+ + S+PTF F++N + +    GAD+  L   +A+
Sbjct:    4 VRTMTDFHKRIEAADD--KLIVLDFYANWCGPCKDMESTVKSLARKYSTKAVVLKIDVDKFEELTERYKVRSMPTFVFLRNNRRLAAFSGADEHKLTNMMAK 103          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.939e-13
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = -3
Query:  151 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQH 396
            V++ F A WCGPCR I+P+   LA +Y  K+   K++ DE+ + AT++ I S+PT  F KNG+  D V+GA  K+ L  K+ ++
Sbjct:   88 VLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKY 171          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: TXND2_RAT (Thioredoxin domain-containing protein 2 OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 7.757e-13
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = -3
Query:  154 LRDGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 480
            L +G V  I    EFE  L  A    +LV + F+A WCGPCR + P F +L+ K+  V+FL+VD ++   +     +  +PTF F KN ++V +  GA    LE+ IA+
Sbjct:  442 LEEGMVRVIKDKEEFEEVLKDAGE--KLVAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVDTEDCEQLVQDCEVFHLPTFQFYKNEEKVGEFSGALVEKLEKSIAE 548          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 7.757e-13
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = -3
Query:  151 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQH 396
            V++ F A WCGPC+ I+P+   LA +Y+ K+   K++ DEA  +AT++NI S+PT  F KNG+  + ++GA  KS L   I ++
Sbjct:   95 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY 178          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.323e-12
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  148 LVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALERKIAQHA 399
            LV++ F A WCGPCR ++P+  NLA++   V   K++IDE    A  + + S+PT    K+G EV +VVG  DK  L   I +HA
Sbjct:   18 LVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKHA 102          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.323e-12
Identity = 34/84 (40.48%), Postives = 55/84 (65.48%), Query Frame = -3
Query:  151 LVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALERKIAQH 399
            LV++ F A WCGPC+ ++P+   LA++   V  LK+DID +   A ++ + S+PT    K+GKEV++ VG  DK +L + I++H
Sbjct:   18 LVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKH 101          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO1_DROME (Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.728e-12
Identity = 33/102 (32.35%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  154 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 456
            + + +++  ++ AA    +L++L F ATWCGPC+ +     +LA KY+ K V LK+D+D+  ++  R+ + S+PTF F++  + +    GAD+  L   +A+
Sbjct:    4 VRTMNDYHKRIEAADD--KLIVLDFYATWCGPCKEMESTVKSLARKYSSKAVVLKIDVDKFEELTERYKVRSMPTFVFLRQNRRLASFAGADEHKLTNMMAK 103          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.948e-12
Identity = 30/106 (28.30%), Postives = 62/106 (58.49%), Query Frame = -3
Query:  151 QVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 468
            +V  + S  ++ T+++A     ++ ++ F A WCGPC+++ P    L+ +  K  F+ V+ D+  D+A +  + ++PT    + G+E+D++VGAD   L   +A++
Sbjct:   18 KVNAVESFGDYNTRISAD----KVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKY 119          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.948e-12
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  190 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 444
            S+F++K+ +  +     ++ F ATWCGPC+ I+P+   LA  Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    9 SDFDSKIESGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVG 89          
The following BLAST results are available for this feature:
BLAST of CF835078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
THIO_CHLLT3.482e-1338.00Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
THIO1_DROYA4.548e-1334.31Thioredoxin-1 OS=Drosophila yakuba GN=dhd PE=2 SV=... [more]
TRXM_PEA5.939e-1341.67Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TXND2_RAT7.757e-1337.61Thioredoxin domain-containing protein 2 OS=Rattus ... [more]
TRXM_SPIOL7.757e-1341.67Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO_CHLPN1.323e-1242.35Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
THIO_CHLMU1.323e-1240.48Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO1_DROME1.728e-1232.35Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE... [more]
TRX2_SCHPO2.948e-1228.30Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
THIO_STAES2.948e-1239.53Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06K03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835078 ID=CF835078; Name=CF835078; organism=Citrus sinensis; type=EST; length=566bp
TTTTTTTTTTTTTTTGGAGCAAGTTATTTTTATTCAATACTGAAATCTTT
ATCAGACATTATTTGCTTGGCAAACAAATGGGTAGGAAAGGCTTGCAAGC
AGAGATTACTCTAAAGTTCTCATTATTCAGGAGTGGTTTTACTGGCCAGC
ATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTATCAGCCCCGACAACCT
TGTCAACTTCCTTACCATTCTTTATGAAGAAAAAGGTGGGAACAGAACCA
ATATTCCAGCGTGTAGCTACATCTCTTGCCTCATCTATGTCAACTTTCAA
GAAAACAACCTTCGTGTATTTTGAGGCTAAGTTTGTAAAAAGAGGAGAAA
TGAAACGGCAGGGCCCGCACCATGTTGCAGTAAAGTACAGAATCACCAGG
CGCAATGCTCTAGTAGCAGCATTCAACTTAGTTTCAAATTCACTAGCTGA
GTGAATACCCATTACTTGCCCATCCCTTAAACCAGACAAAGCTTCTCGAT
CGGCTCCAGCTTGTTTTCTTTGCCTCTCACGTTCAAAATTTTTTAGCTCC
CTTTCTTTACGCAGCC
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