CF835078

Overview
NameCF835078
Unique NameCF835078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1776 contig Csv1_Contig1776:634..1199. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  190 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 444
            ++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    9 ADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  190 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 444
            ++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    9 ADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  190 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 444
            ++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    9 ADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  190 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 444
            ++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    9 ADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  190 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 444
            ++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    9 ADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  190 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 444
            ++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    9 ADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  190 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 444
            ++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    9 ADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  190 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 444
            ++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    9 ADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  190 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 444
            ++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    9 ADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of CF835078 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 27/69 (39.13%), Postives = 45/69 (65.22%), Query Frame = -3
Query:  190 VILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 396
            V++ F A WCGPC+ + P+F  +A       F+KVD+D+A ++++ + I S+PT  F ++GK  DK +G
Sbjct:   20 VVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIG 88          
The following BLAST results are available for this feature:
BLAST of CF835078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
THIO_STAAU8.576e-1238.37Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS8.576e-1238.37Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR8.576e-1238.37Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN8.576e-1238.37Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM8.576e-1238.37Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC8.576e-1238.37Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB8.576e-1238.37Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA88.576e-1238.37Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA38.576e-1238.37Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_MYCGA8.576e-1239.13Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06K03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835078 ID=CF835078; Name=CF835078; organism=Citrus sinensis; type=EST; length=566bp
TTTTTTTTTTTTTTTGGAGCAAGTTATTTTTATTCAATACTGAAATCTTT
ATCAGACATTATTTGCTTGGCAAACAAATGGGTAGGAAAGGCTTGCAAGC
AGAGATTACTCTAAAGTTCTCATTATTCAGGAGTGGTTTTACTGGCCAGC
ATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTATCAGCCCCGACAACCT
TGTCAACTTCCTTACCATTCTTTATGAAGAAAAAGGTGGGAACAGAACCA
ATATTCCAGCGTGTAGCTACATCTCTTGCCTCATCTATGTCAACTTTCAA
GAAAACAACCTTCGTGTATTTTGAGGCTAAGTTTGTAAAAAGAGGAGAAA
TGAAACGGCAGGGCCCGCACCATGTTGCAGTAAAGTACAGAATCACCAGG
CGCAATGCTCTAGTAGCAGCATTCAACTTAGTTTCAAATTCACTAGCTGA
GTGAATACCCATTACTTGCCCATCCCTTAAACCAGACAAAGCTTCTCGAT
CGGCTCCAGCTTGTTTTCTTTGCCTCTCACGTTCAAAATTTTTTAGCTCC
CTTTCTTTACGCAGCC
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