CF835128

Overview
NameCF835128
Unique NameCF835128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835128 vs. ExPASy Swiss-Prot
Match: AGL2_BACTQ (Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefaciens PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 68/199 (34.17%), Postives = 105/199 (52.76%), Query Frame = 2
Query:   59 EPYRLFNLDVFEYLLDSPFGLYGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMS-EAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLSAKGRHMVTIVDPHIKRDDSY 652
            E   ++N DV+         LY S P+ ++  ++G   G F+ N  +   D                 Q   D +  S E G +D + F GP PKDV+ QYT +TG   +PP +++ YHQ R++Y  E++V ++   F E DIP DV++LDI + +G + FT+DR  FP+ +++   L  KG  +V IVDP +K D  Y
Sbjct:  164 ETMTMWNTDVYAPHNPETDPLYQSHPYFMTV-RNGSAHGIFFDNTYKTTFDF----------------QTATDEYCFSAEGGAIDYYVFAGPTPKDVLEQYTDLTGRMPLPPKWALGYHQSRYSYETEQEVREIAQTFIEKDIPLDVIYLDIHYMNGYRVFTFDRNRFPNLKQLIADLKQKGIRVVPIVDPGVKEDPEY 345          
BLAST of CF835128 vs. ExPASy Swiss-Prot
Match: AGLU_BETVU (Alpha-glucosidase OS=Beta vulgaris PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.829e-25
Identity = 72/205 (35.12%), Postives = 103/205 (50.24%), Query Frame = 2
Query:   53 HSEPYRLFNLDVFEYLLDSPFGLYGSIPFMISHGKS---GRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQ--RKLSAKGRHMVTIVDPHIKRDDSY 652
            H++   L+N D+  +  D    LYGS PF +    S   G T G F LN+  M ++  GD               RI   +    GI+D + F G  P+ V+ QYT + G P+  P ++  +HQCRW YRD  ++E V  K+ E  IP +V+W DI++ D  K FT D + FP  +  Q   KL   G+  V I+DP I  + SY
Sbjct:  222 HNQILTLWNADIASFNRD--LNLYGSHPFYMDVRSSPMVGSTHGVFLLNSNGMDVEYTGD---------------RIT--YKVIGGIIDLYIFAGRTPEMVLDQYTKLIGRPAPMPYWAFGFHQCRWGYRDVNEIETVVDKYAEARIPLEVMWTDIDYMDAFKDFTLDPVHFPLDKMQQFVTKLHRNGQRYVPILDPGINTNKSY 407          
BLAST of CF835128 vs. ExPASy Swiss-Prot
Match: LYAG_MOUSE (Lysosomal alpha-glucosidase OS=Mus musculus GN=Gaa PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25
Identity = 64/172 (37.21%), Postives = 86/172 (50.00%), Query Frame = 2
Query:  119 LYGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLSAKGRHMVTIVDPHI 634
            LYGS PF ++    G   G F LN+  M +            IL PS        W S  GI+D + F+GP PK VV+QY  V G P MPP + + +H CRW Y     V QV         P DV W D+++ D ++ FT+++ SF    +M R+L   GR  + IVDP I
Sbjct:  291 LYGSHPFYLALEDGGLAHGVFLLNSNAMDV------------ILQPSPALT----WRSTGGILDVYVFLGPEPKSVVQQYLDVVGYPFMPPYWGLGFHLCRWGYSSTAIVRQVVENMTRTHFPLDVQWNDLDYMDARRDFTFNQDSFADFPDMVRELHQDGRRYMMIVDPAI 446          
BLAST of CF835128 vs. ExPASy Swiss-Prot
Match: LYAG_PONAB (Lysosomal alpha-glucosidase OS=Pongo abelii GN=GAA PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.450e-24
Identity = 62/172 (36.05%), Postives = 83/172 (48.26%), Query Frame = 2
Query:  119 LYGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLSAKGRHMVTIVDPHI 634
            LYGS PF ++    G   G F LN+  M +            +L PS        W S  GI+D + F+GP PK VVRQY  V G P MPP + + +H CRW Y       QV         P DV W D+++ D ++ FT+++  F     M R+L   GR  + IVDP I
Sbjct:  291 LYGSHPFYLALEDGGSAHGVFLLNSNAMDV------------VLQPSPALS----WRSTGGILDVYIFLGPEPKSVVRQYLDVVGYPFMPPYWGLGFHLCRWGYSSTAITSQVVENMTRAHFPLDVQWNDLDYMDARRDFTFNKDGFRDFPAMVRELHQGGRRYMMIVDPAI 446          
BLAST of CF835128 vs. ExPASy Swiss-Prot
Match: LYAG_RAT (Lysosomal alpha-glucosidase OS=Rattus norvegicus GN=Gaa PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.004e-23
Identity = 61/172 (35.47%), Postives = 84/172 (48.84%), Query Frame = 2
Query:  119 LYGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLSAKGRHMVTIVDPHI 634
            LYGS PF ++    G   G F LN+  M +            +L PS        W S  GI+D + F+GP PK VV+QY  V G P MPP + + +H CRW Y     V QV         P DV W D+++ D ++ FT+++  F    +M  +L   GR  + IVDP I
Sbjct:  291 LYGSHPFYLALEDGGLAHGVFLLNSNAMDV------------VLQPSPALT----WRSTGGILDVYVFLGPEPKSVVQQYLDVVGYPFMPPYWGLGFHLCRWGYSSTAIVRQVVENMTRTHFPLDVQWNDLDYMDARRDFTFNQDGFADFPDMVHELHQGGRRYMMIVDPAI 446          
BLAST of CF835128 vs. ExPASy Swiss-Prot
Match: LYAG_HUMAN (Lysosomal alpha-glucosidase OS=Homo sapiens GN=GAA PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 60/172 (34.88%), Postives = 83/172 (48.26%), Query Frame = 2
Query:  119 LYGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLSAKGRHMVTIVDPHI 634
            LYGS PF ++    G   G F LN+  M +            +L PS        W S  GI+D + F+GP PK VV+QY  V G P MPP + + +H CRW Y       QV         P DV W D+++ D ++ FT+++  F     M ++L   GR  + IVDP I
Sbjct:  291 LYGSHPFYLALEDGGSAHGVFLLNSNAMDV------------VLQPSPALS----WRSTGGILDVYIFLGPEPKSVVQQYLDVVGYPFMPPYWGLGFHLCRWGYSSTAITRQVVENMTRAHFPLDVQWNDLDYMDSRRDFTFNKDGFRDFPAMVQELHQGGRRYMMIVDPAI 446          
BLAST of CF835128 vs. ExPASy Swiss-Prot
Match: LYAG_BOVIN (Lysosomal alpha-glucosidase OS=Bos taurus GN=GAA PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.110e-22
Identity = 60/172 (34.88%), Postives = 82/172 (47.67%), Query Frame = 2
Query:  119 LYGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLSAKGRHMVTIVDPHI 634
            LYGS PF +     G   G F LN+  M +            +L PS        W S  GI+D + F+GP PK VV+QY  V G P MPP + + +H CRW Y       QV         P DV W D+++ D ++ FT+++  F     M ++L   GR  + IVDP I
Sbjct:  278 LYGSHPFYLVLEDGGLAHGVFLLNSNAMDV------------VLQPSPALS----WRSTGGILDVYIFLGPEPKSVVQQYLDVVGYPFMPPYWGLGFHLCRWGYSTSAITRQVVENMTRAYFPLDVQWNDLDYMDARRDFTFNKDHFGDFPAMVQELHQGGRRYIMIVDPAI 433          
BLAST of CF835128 vs. ExPASy Swiss-Prot
Match: AMYG_CANAL (Glucoamylase 1 OS=Candida albicans GN=GAM1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.110e-22
Identity = 52/132 (39.39%), Postives = 74/132 (56.06%), Query Frame = 2
Query:  284 WMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPE--EMQRKLSAKGRHMVTIVD-------PHIKRDDSY 652
            W + +G++D +FF GP PKDV++QY S  G+P+M P +++ YHQCRW Y   E +E V   F + DIP + +W DI++ DG K FT D   FP  +  +    L    +H V I D       P+   DD Y
Sbjct:  268 WRALSGVIDLYFFSGPDPKDVIQQYVSEIGLPAMQPYWALGYHQCRWGYDTVESLETVVENFKKFDIPLETIWSDIDYMDGYKDFTNDPYRFPTDKFRKFLDDLHNNSQHYVPIFDAAIYVPNPNNATDDDY 399          
BLAST of CF835128 vs. ExPASy Swiss-Prot
Match: AGLU_HORVU (Alpha-glucosidase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 64/199 (32.16%), Postives = 100/199 (50.25%), Query Frame = 2
Query:   53 HSEPYRLFNLDVFEYLLDSPFGLYGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPE--EMQRKLSAKGRHMVTIVDPHIKRD 643
            H++ + L+N D+    +D    LYGS PF +     G   G   L++  M  DVL  G      ++                G++D +FF GP P  VV QYT +   P+  P +S  +HQCR+ Y +  D+E+V +++ +  IP +V+W DI++ DG K FT DR++F   E      +L    +  V I+DP I+ D
Sbjct:  190 HNDSFTLWNADIGASYVD--VNLYGSHPFYMDVRAPGTAHGVLLLSSNGM--DVLYGGSYVTYKVI---------------GGVLDFYFFAGPNPLAVVDQYTQLIARPAPMPYWSFGFHQCRYGYLNVSDLERVVARYAKARIPLEVMWTDIDYMDGFKDFTLDRVNFTAAELRPFVDRLHRNAQKYVLILDPGIRVD 369          
BLAST of CF835128 vs. ExPASy Swiss-Prot
Match: AMYG_DEBOC (Glucoamylase 1 OS=Debaryomyces occidentalis GN=GAM1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.039e-20
Identity = 45/119 (37.82%), Postives = 69/119 (57.98%), Query Frame = 2
Query:  284 WMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPE--EMQRKLSAKGRHMVTIVDPHI 634
            W + +G++D +FF GP PKD ++QY    G+P+  P +S+ YHQCRW Y   E + +V   F + +IP + +W DI++ D  K FT+D   FP  E  +   +L    +H V I+D  I
Sbjct:  278 WRALSGVIDLYFFSGPTPKDAIQQYVKEIGLPAFQPYWSLGYHQCRWGYDTIEKLSEVVENFKKFNIPLETIWSDIDYMDSYKDFTYDPHRFPLDEYRKFLDELHKNNQHYVPILDAAI 396          
The following BLAST results are available for this feature:
BLAST of CF835128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
AGL2_BACTQ5.686e-2734.17Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefa... [more]
AGLU_BETVU1.829e-2535.12Alpha-glucosidase OS=Beta vulgaris PE=1 SV=1[more]
LYAG_MOUSE5.322e-2537.21Lysosomal alpha-glucosidase OS=Mus musculus GN=Gaa... [more]
LYAG_PONAB3.450e-2436.05Lysosomal alpha-glucosidase OS=Pongo abelii GN=GAA... [more]
LYAG_RAT1.004e-2335.47Lysosomal alpha-glucosidase OS=Rattus norvegicus G... [more]
LYAG_HUMAN2.920e-2334.88Lysosomal alpha-glucosidase OS=Homo sapiens GN=GAA... [more]
LYAG_BOVIN1.110e-2234.88Lysosomal alpha-glucosidase OS=Bos taurus GN=GAA P... [more]
AMYG_CANAL1.110e-2239.39Glucoamylase 1 OS=Candida albicans GN=GAM1 PE=1 SV... [more]
AGLU_HORVU2.093e-2132.16Alpha-glucosidase OS=Hordeum vulgare PE=2 SV=1[more]
AMYG_DEBOC1.039e-2037.82Glucoamylase 1 OS=Debaryomyces occidentalis GN=GAM... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06L13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835128 ID=CF835128; Name=CF835128; organism=Citrus sinensis; type=EST; length=658bp
CGAACGTGCTACTTTTTTTGCTTTAAAACCAACTAGGGGGCCTAATGTGG
ACCATTCTGAACCTTATAGGTTGTTTAATTTGGATGTTTTTGAGTATCTT
CTTGACTCACCATTTGGGCTATATGGATCCATTCCGTTCATGATATCTCA
TGGGAAATCGGGAAGAACTTCTGGGTTCTTTTGGTTGAATGCTGCTGAGA
TGCAGATTGATGTATTGGGTGATGGTTGGAATGCGGAAAGTGGGATTTTG
TTGCCTTCTAAACAGAAGAGAATTGATACTTTTTGGATGAGTGAAGCTGG
GATTGTGGACACTTTCTTCTTTGTGGGTCCTGGTCCAAAAGATGTAGTGA
GGCAATATACAAGTGTCACTGGGATGCCATCTATGCCGCCGTTGTTTTCC
ATTGCGTATCACCAATGTAGGTGGAACTATAGGGATGAGGAGGATGTGGA
GCAAGTGGATTCCAAGTTCGATGAGCATGATATTCCTTATGATGTTTTGT
GGCTGGATATTGAACATACAGATGGCAAGAAGTATTTTACTTGGGATAGG
TTGTCGTTTCCACACCCGGAAGAGATGCAGAGAAAGTTGTCTGCCAAGGG
TAGGCATATGGTAACGATTGTGGATCCACATATTAAGAGGGATGATTCAT
ATTGGTTG
back to top