CF835130

Overview
NameCF835130
Unique NameCF835130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835130 vs. ExPASy Swiss-Prot
Match: Y4294_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 54/192 (28.12%), Postives = 94/192 (48.96%), Query Frame = 2
Query:  167 ESFMFNLEEVERATQCFSEANLLGKSSFSATYKGILRDGSVVAVKCIAKTSCKSDEGEFLKGLKILTSLKHENLASLRGICCSKGRGECFLIYDFVPNGNLLQHL-DLEAGSEKVLEWATRISVIKGIAKGISYLHGKRPGLVHPNLSAEKVLIH-RRYNPLLSDSGLHKLLADDIVFSMLKASAAMGYLAP 736
            +S     EE+ RA      A +LG+SS   +Y+  L +G  + VK + +   K  + EF K +K  ++++H N+ +LRG      + E  ++ D++  G+L   L D        L W  R+ +   +A+G++YLH  R  + H NL A  +L+     N  ++D  LH+L+        +  +  +GY AP
Sbjct:  743 DSIKLTPEELSRAP-----AEVLGRSSHGTSYRATLDNGVFLTVKWLREGVAKQRK-EFAKEVKKFSNIRHPNVVTLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLAWTQRLKIAVDVARGLNYLHFDR-AVPHGNLKATNILLDGAELNARVADYCLHRLMTQAGTVEQILDAGILGYRAP 927          
BLAST of CF835130 vs. ExPASy Swiss-Prot
Match: Y2165_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 47/158 (29.75%), Postives = 88/158 (55.70%), Query Frame = 2
Query:  179 FNLEEVERATQCFSEANLLGKSSFSATYKGILRDGSVVAVKCIAKTSCKSDEGEFLKGLKILTSLKHENLASLRGICCSKGRGECFLIYDFVPNGNLLQHLDLEAGSE----KVLEWATRISVIKGIAKGISYLHGK-RPGLVHPNLSAEKVLIHRRY 637
            F+ E++ +AT+ F++ANL+ +      ++G L +G  V +K I     KS+   ++  L++ +   H+ L    G C  +   + FL+Y F+ +G+L   L  ++ +E    K L+W TR+ +  G A+G+SYLH +  P LVH ++ A  +L+  ++
Sbjct:  515 FSYEQLLQATEEFNDANLIKRGHSGNLFRGFLENGIPVVIKKIDVREGKSEG--YISELELFSKAGHQRLVPFLGHCL-ENESQKFLVYKFMRHGDLASSLFRKSENEGDGLKSLDWITRLKIALGAAEGLSYLHHECSPPLVHRDVQASSILLDDKF 669          
BLAST of CF835130 vs. ExPASy Swiss-Prot
Match: Y1756_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07560 OS=Arabidopsis thaliana GN=At1g07560 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 60/207 (28.99%), Postives = 100/207 (48.31%), Query Frame = 2
Query:  125 AKGQSGNGFSQEVLESFM--FNLEEVERATQCFSEANLLGKSSFSATYKGILRDGSVVAVKCIAKTSCKSDEGEFLKGLKILTSLKHENLASLRGICCSKGRGECFLIYDFVPNGNLLQHLDLEAGSEKVLEWATRISVIKGIAKGISYLH-GKRPGLVHPNLSAEKVLIHRRYNPLLSDSGLHKL--LADDIVFSMLKASAAMGYL 730
            +  + G   SQ+ +E+    +   EV   T+ F    +LGK  F   Y G +     VAVK ++ +S +  + EF   +++L  + H NL SL G C  K      LIY ++ NG+L +H         ++ W  R+++    A G+ YLH G +P +VH ++ +  +L+  +    L+D GL +   + D+   S L A    GYL
Sbjct:  540 SSSRKGPSPSQQSIETIKKRYTYAEVLAMTKKFER--VLGKGGFGMVYHGYINGTEEVAVKLLSPSSAQGYK-EFKTEVELLLRVYHTNLVSLVGYCDEK--DHLALIYQYMVNGDLKKHF----SGSSIISWVDRLNIAVDAASGLEYLHIGCKPLIVHRDVKSSNILLDDQLQAKLADFGLSRSFPIGDESHVSTLVA-GTFGYL 736          
BLAST of CF835130 vs. ExPASy Swiss-Prot
Match: IRAK4_HUMAN (Interleukin-1 receptor-associated kinase 4 OS=Homo sapiens GN=IRAK4 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 56/197 (28.43%), Postives = 95/197 (48.22%), Query Frame = 2
Query:  179 FNLEEVERATQCFSE------ANLLGKSSFSATYKGILRDGSVVAVKCIAKTSCKSDE--GEFLKGLKILTSLKHENLASLRGICCSKGRGECFLIYDFVPNGNLLQHLDLEAGSEKVLEWATRISVIKGIAKGISYLHGKRPGLVHPNLSAEKVLIHRRYNPLLSDSGLHKL---LADDIVFSMLKASAAMGYLAP 736
            F+  E++  T  F E       N +G+  F   YKG + + +V   K  A     ++E   +F + +K++   +HENL  L G   S G   C L+Y ++PNG+LL  L    G+   L W  R  + +G A GI++LH      +H ++ +  +L+   +   +SD GL +     A  ++ S +  + A  Y+AP
Sbjct:  168 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFS-SDGDDLC-LVYVYMPNGSLLDRLSCLDGTPP-LSWHMRCKIAQGAANGINFLHENHH--IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTA--YMAP 357          
BLAST of CF835130 vs. ExPASy Swiss-Prot
Match: HSL1_ARATH (Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 64/215 (29.77%), Postives = 100/215 (46.51%), Query Frame = 2
Query:  146 GFSQ-EVLESFMFNLEEVERATQCFSEANLLGKSSFSATYKGILRDGSVVAVKCIAKTS------CKSDEG--------EFLKGLKILTSLKHENLASLRGICCSKGRGECFLIYDFVPNGNLLQHLDLEAGSEKVLEWATRISVIKGIAKGISYL-HGKRPGLVHPNLSAEKVLIHRRYNPLLSDSGLHKL--LADDIVFSMLKASAAMGYLAP 736
            GFS+ E+LES                E N++G  +    YK +L +G  VAVK +   S      C  ++G         F   ++ L  ++H+N+  L   CC   R    L+Y+++PNG+L   L    G   +L W TR  +I   A+G+SYL H   P +VH ++ +  +LI   Y   ++D G+ K   L      SM   + + GY+AP
Sbjct:  666 GFSEHEILESL--------------DEDNVIGAGASGKVYKVVLTNGETVAVKRLWTGSVKETGDCDPEKGYKPGVQDEAFEAEVETLGKIRHKNIVKLW--CCCSTRDCKLLVYEYMPNGSLGDLLHSSKGG--MLGWQTRFKIILDAAEGLSYLHHDSVPPIVHRDIKSNNILIDGDYGARVADFGVAKAVDLTGKAPKSMSVIAGSCGYIAP 862          
BLAST of CF835130 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.202e-14
Identity = 60/208 (28.85%), Postives = 100/208 (48.08%), Query Frame = 2
Query:   77 SSPLISLEYSNGWDPLAKGQSGNGFSQEV------LESFMFNLEEVERATQCFSEANLLGKSSFSATYKGILRDGSVVAVKCIAKTSCKSDEGEFLKGLKILTSLKHENLASLRGICCSKGRGECFLIYDFVPNGNLLQHLDLEAGSEKV-LEWATRISVIKGIAKGISYLHGKRPGLVHPNLSAEKVLIHRRYNPLLSDSGLHKLLA 679
            SS  ++ E +     +A G S NG S+        L  F+ +  E +      + A +LGK +F ++YK     G VVAVK +        E EF + L++L S+ H NL +L  I     R E  ++++++  G+L   L    GS +  L W TR ++  G A+ ISYLH +     H N+ +  +L+   +   +SD  L  +++
Sbjct:  291 SSAAVAKESNGPPAVVANGASENGVSKNPAAVSKDLTFFVKSFGEFDLDGLLKASAEVLGKGTFGSSYKASFDHGLVVAVKRLRDVVVP--EKEFREKLQVLGSISHANLVTL--IAYYFSRDEKLVVFEYMSRGSLSALLHGNKGSGRSPLNWETRANIALGAARAISYLHSRDATTSHGNIKSSNILLSESFEAKVSDYCLAPMIS 494          
BLAST of CF835130 vs. ExPASy Swiss-Prot
Match: Y1518_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51860 OS=Arabidopsis thaliana GN=At1g51860 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.202e-14
Identity = 53/161 (32.92%), Postives = 86/161 (53.42%), Query Frame = 2
Query:  191 EVERATQCFSEANLLGKSSFSATYKGILRDGSVVAVKCIAKTSCKSDEGEFLKGLKILTSLKHENLASLRGICCSKGRGECFLIYDFVPNGNLLQHLDLEAGSEKVLEWATRISVIKGIAKGISYLH-GKRPGLVHPNLSAEKVLIHRRYNPLLSDSGLHK 670
            EV + T  F    +LGK  F   Y G L DG+ VAVK ++ +S +  + EF   +++L  + H +L  L G C         LIY+++ NG+L +++  + G   VL W  R+ +    A+G+ YLH G RP +VH ++    +L++ R    L+D GL +
Sbjct:  578 EVLKMTNNFER--VLGKGGFGTVYHGNL-DGAEVAVKMLSHSSAQGYK-EFKAEVELLLRVHHRHLVGLVGYC--DDGDNLALIYEYMANGDLRENMSGKRGGN-VLTWENRMQIAVEAAQGLEYLHNGCRPPMVHRDVKTTNILLNERCGAKLADFGLSR 731          
BLAST of CF835130 vs. ExPASy Swiss-Prot
Match: Y1570_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 53/167 (31.74%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  176 MFNLEEVERATQCFSEANLLGKSSFSATYKGILRDGSVVAVKCIAKTSCKSDEGEFLKGLKILTSLKHENLASLRGICCSKGRGECFLIYDFVPNGNLLQHLDLEAGS-EKVLEWATRISVIKGIAKGISYLH-GKRPGLVHPNLSAEKVLIHRRYNPLLSDSGLHK 670
            +F   +V + T  F +  +LGK  F   Y G   D   VAVK +++TS +  + EF   +++L  + H NL +L G        +  LIY+F+ NGN+  HL   AG  +  L W  R+ +    A+G+ YLH G +P +VH ++    +L++ +    L+D GL +
Sbjct:  559 LFTFADVIKMTNNFGQ--VLGKGGFGTVYHGFY-DNLQVAVKLLSETSAQGFK-EFRSEVEVLVRVHHVNLTALIGYFHEGD--QMGLIYEFMANGNMADHL---AGKYQHTLSWRQRLQIALDAAQGLEYLHCGCKPPIVHRDVKTSNILLNEKNRAKLADFGLSR 716          
BLAST of CF835130 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 53/189 (28.04%), Postives = 90/189 (47.62%), Query Frame = 2
Query:  179 FNLEEVERATQCFSEANLLGKSSFSATYKGILRDGSVVAVKCIAKTSCK-SDEGEFLKGLKILTSLKHENLASLRGICCSKGRGECFLIYDFVPNGNLLQHLDLEAGSEKVLEWATRISVIKGIAKGISYLHG-KRPGLVHPNLSAEKVLIHRRYNPLLSDSGLHKLLADDIVFSML-KASAAMGYLAP 736
            F +  +++ T  FS  NL+G     + Y+  L  G + AV+ + K S    +EG+FL+ +  +  ++H N+  L G C      +  LI+++  NG L   L ++   +  L W  R+ +    AK + YLH    P  +H N  +  +L+       +SD GL  L++   V  +  +  AA GY AP
Sbjct:  466 FTVASLQQHTNSFSHENLIGTGMLGSVYRAELPGGKLFAVRKLDKKSPNHEEEGKFLELVNNIDRIRHANIVQLVGFCSE--HSQRLLIHEYCRNGTLHDLLHIDDRLKIELSWNVRVRIALEAAKALEYLHEICDPPSIHRNFKSANILLDDDIRVHVSDCGLAPLISSGAVSQLSGQLLAAYGYGAP 652          
BLAST of CF835130 vs. ExPASy Swiss-Prot
Match: Y5392_ARATH (Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.159e-13
Identity = 51/184 (27.72%), Postives = 92/184 (50.00%), Query Frame = 2
Query:  191 EVERATQCFSEANLLGKSSFSATYKGILRDGSVVAVKCIAKTSCKSDEGEFLKGLKILTSLKHENLASLRGICCSKGRGECFLIYDFVPNGNLLQHLDLEAGSEKVLEWATRISVIKGIAKGISYLH-GKRPGLVHPNLSAEKVLIHRRYNPLLSDSGLHKLLAD-DIVFSMLKASAAMGYLAP 736
            E+++ T+ FS    +GK  F   Y+G L +G  VAVK +     K +  +F+  +  ++   H N+ SL G C    +    +I +F+ +G+L Q   +           T   +  GIA+G+ YLH G +  +VH ++  + +L+   + P ++D GL KL    + + S++     +GY+AP
Sbjct:  490 ELKKITKSFSHT--VGKGGFGTVYRGNLSNGRTVAVKVL--KDLKGNGDDFINEVTSMSQTSHVNIVSLLGFCYEGSKRA--IISEFLEHGSLDQF--ISRNKSLTPNVTTLYGIALGIARGLEYLHYGCKTRIVHFDIKPQNILLDDNFCPKVADFGLAKLCEKRESILSLIDTRGTIGYIAP 665          
The following BLAST results are available for this feature:
BLAST of CF835130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
Y4294_ARATH3.050e-1428.13Probable LRR receptor-like serine/threonine-protei... [more]
Y2165_ARATH3.050e-1429.75Probable LRR receptor-like serine/threonine-protei... [more]
Y1756_ARATH3.983e-1428.99Probable LRR receptor-like serine/threonine-protei... [more]
IRAK4_HUMAN3.983e-1428.43Interleukin-1 receptor-associated kinase 4 OS=Homo... [more]
HSL1_ARATH3.983e-1429.77Receptor-like protein kinase HSL1 OS=Arabidopsis t... [more]
Y5659_ARATH5.202e-1428.85Probable inactive receptor kinase At5g16590 OS=Ara... [more]
Y1518_ARATH5.202e-1432.92Probable LRR receptor-like serine/threonine-protei... [more]
Y1570_ARATH6.794e-1431.74Probable LRR receptor-like serine/threonine-protei... [more]
SRF1_ARATH6.794e-1428.04Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
Y5392_ARATH1.159e-1327.72Probable receptor-like protein kinase At5g39020 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06L14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835130 ID=CF835130; Name=CF835130; organism=Citrus sinensis; type=EST; length=737bp
GAAAATTGGAACTGTTTTTGATAATTCAGATAGTCGTCTTAGTACCGACC
ACCTAAAGGAGGTTTGCAGGAGAAATTCTTCCCCACTTATCAGCCTTGAG
TATTCCAATGGATGGGATCCGTTGGCCAAAGGTCAGAGTGGAAATGGGTT
TTCTCAGGAAGTTCTTGAGAGTTTCATGTTTAATTTGGAAGAGGTGGAGC
GAGCAACTCAGTGTTTCTCAGAGGCGAATTTGCTGGGAAAGAGCAGTTTT
TCTGCCACCTACAAAGGGATCCTGAGAGATGGATCAGTTGTTGCTGTAAA
GTGCATTGCCAAGACAAGTTGCAAGTCTGACGAAGGTGAGTTTTTGAAGG
GGCTAAAGATATTGACCTCATTAAAACATGAAAATCTTGCAAGCTTGAGA
GGTATCTGCTGTTCAAAAGGCAGAGGTGAGTGTTTTCTCATCTATGATTT
TGTCCCCAATGGAAACCTCTTACAGCATCTTGATTTAGAGGCAGGCAGTG
AAAAGGTTCTTGAATGGGCTACCAGAATTTCTGTCATAAAGGGAATTGCC
AAAGGGATCAGTTATTTACATGGAAAGAGACCTGGTCTAGTTCACCCGAA
TTTGTCTGCTGAGAAGGTGCTCATTCATAGACGATATAATCCCTTGCTTT
CAGATTCTGGCCTGCACAAACTCCTTGCAGATGATATTGTTTTCTCAATG
CTCAAAGCCAGTGCTGCCATGGGATATCTGGCTCCTG
back to top