CF835130

Overview
NameCF835130
Unique NameCF835130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835130 vs. ExPASy Swiss-Prot
Match: TESK2_RAT (Dual specificity testis-specific protein kinase 2 OS=Rattus norvegicus GN=Tesk2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 47/154 (30.52%), Postives = 80/154 (51.95%), Query Frame = 2
Query:  233 LGKSSFSATYKGILR-DGSVVAVKCIAKTSCKSDEGEFLKGLKILTSLKHENLASLRGICCSKGRGECFLIYDFVPNGNLLQHLDLEAGSEKVLEWATRISVIKGIAKGISYLHGKRPGLVHPNLSAEKVLIHR---RYNPLLSDSGLHKLLAD 682
            +G   FS  +K   R  G V+A+K     +  S+    LK ++++  L H N+    G+C    +G+   + +++ +GNL Q LD    S   L W  R+ +   IA G+SYLH K  G+ H +L+++  LI R    Y+ +++D GL + + D
Sbjct:   64 IGSGFFSEVFKVRHRASGQVMALKM---NTLSSNRANLLKEMQLMNRLSHPNILRFMGVCVH--QGQLHALTEYINSGNLEQLLD----SNLYLPWTVRVKLAYDIAVGLSYLHFK--GIFHRDLTSKNCLIKRDENGYSAVVADFGLAEKIPD 206          
BLAST of CF835130 vs. ExPASy Swiss-Prot
Match: ERBB4_MOUSE (Receptor tyrosine-protein kinase erbB-4 OS=Mus musculus GN=Erbb4 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  230 LLGKSSFSATYKGI-LRDGSVV----AVKCIAKTSCKSDEGEFLKGLKILTSLKHENLASLRGICCSKGRGECFLIYDFVPNGNLL----QHLDLEAGSEKVLEWATRISVIKGIAKGISYLHGKRPGLVHPNLSAEKVLIHRRYNPLLSDSGLHKLLADD 685
            +LG  +F   YKGI + +G  V    A+K + +T+      EF+    I+ S+ H +L  L G+C S       L+   +P+G LL    +H D   GS+ +L W  +      IAKG+ YL  +R  LVH +L+A  VL+    +  ++D GL +LL  D
Sbjct:  723 VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP---TIQLVTQLMPHGCLLDYVHEHKD-NIGSQLLLNWCVQ------IAKGMMYLEERR--LVHRDLAARNVLVKSPNHVKITDFGLARLLEGD 871          
BLAST of CF835130 vs. ExPASy Swiss-Prot
Match: ERBB4_HUMAN (Receptor tyrosine-protein kinase erbB-4 OS=Homo sapiens GN=ERBB4 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  230 LLGKSSFSATYKGI-LRDGSVV----AVKCIAKTSCKSDEGEFLKGLKILTSLKHENLASLRGICCSKGRGECFLIYDFVPNGNLL----QHLDLEAGSEKVLEWATRISVIKGIAKGISYLHGKRPGLVHPNLSAEKVLIHRRYNPLLSDSGLHKLLADD 685
            +LG  +F   YKGI + +G  V    A+K + +T+      EF+    I+ S+ H +L  L G+C S       L+   +P+G LL    +H D   GS+ +L W  +      IAKG+ YL  +R  LVH +L+A  VL+    +  ++D GL +LL  D
Sbjct:  723 VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP---TIQLVTQLMPHGCLLEYVHEHKD-NIGSQLLLNWCVQ------IAKGMMYLEERR--LVHRDLAARNVLVKSPNHVKITDFGLARLLEGD 871          
The following BLAST results are available for this feature:
BLAST of CF835130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
TESK2_RAT9.182e-1130.52Dual specificity testis-specific protein kinase 2 ... [more]
ERBB4_MOUSE9.182e-1132.92Receptor tyrosine-protein kinase erbB-4 OS=Mus mus... [more]
ERBB4_HUMAN9.182e-1132.92Receptor tyrosine-protein kinase erbB-4 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835130 ID=CF835130; Name=CF835130; organism=Citrus sinensis; type=EST; length=737bp
GAAAATTGGAACTGTTTTTGATAATTCAGATAGTCGTCTTAGTACCGACC
ACCTAAAGGAGGTTTGCAGGAGAAATTCTTCCCCACTTATCAGCCTTGAG
TATTCCAATGGATGGGATCCGTTGGCCAAAGGTCAGAGTGGAAATGGGTT
TTCTCAGGAAGTTCTTGAGAGTTTCATGTTTAATTTGGAAGAGGTGGAGC
GAGCAACTCAGTGTTTCTCAGAGGCGAATTTGCTGGGAAAGAGCAGTTTT
TCTGCCACCTACAAAGGGATCCTGAGAGATGGATCAGTTGTTGCTGTAAA
GTGCATTGCCAAGACAAGTTGCAAGTCTGACGAAGGTGAGTTTTTGAAGG
GGCTAAAGATATTGACCTCATTAAAACATGAAAATCTTGCAAGCTTGAGA
GGTATCTGCTGTTCAAAAGGCAGAGGTGAGTGTTTTCTCATCTATGATTT
TGTCCCCAATGGAAACCTCTTACAGCATCTTGATTTAGAGGCAGGCAGTG
AAAAGGTTCTTGAATGGGCTACCAGAATTTCTGTCATAAAGGGAATTGCC
AAAGGGATCAGTTATTTACATGGAAAGAGACCTGGTCTAGTTCACCCGAA
TTTGTCTGCTGAGAAGGTGCTCATTCATAGACGATATAATCCCTTGCTTT
CAGATTCTGGCCTGCACAAACTCCTTGCAGATGATATTGTTTTCTCAATG
CTCAAAGCCAGTGCTGCCATGGGATATCTGGCTCCTG
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