CF835136

Overview
NameCF835136
Unique NameCF835136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11430 contig Csv1_Contig11430:1415..2009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP1A1_FELCA (Cytochrome P450 1A1 OS=Felis catus GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 39/113 (34.51%), Postives = 60/113 (53.10%), Query Frame = -3
Query:  205 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKAQPLH 537
            D  ++GF +PK   VFVN W I  D+  W +P  F PERFL  +    K  + ++I FG G+R C G  +A   + L L  L+   ++ +     +DM   +GLT++ A+  H
Sbjct:  398 DTSLSGFYIPKERCVFVNQWQINHDQKLWGDPSEFRPERFLTPDGTINKALSEKVILFGLGKRKCIGETIARLEVFLFLAILLQQVEFSVPQGTKVDMTPIYGLTMKHARCEH 510          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP17A_PANTR (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Pan troglodytes GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 35/87 (40.23%), Postives = 47/87 (54.02%), Query Frame = -3
Query:  280 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG-SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 537
            D  I  F V KG QV +N+WA+  +E  W  P  F+PERFL  +       +   +PFGAG R C G  LA + L L++  L+  FD
Sbjct:  378 DSSIGEFAVDKGTQVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFD 464          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP17A_MOUSE (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Mus musculus GN=Cyp17a1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = -3
Query:  265 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL---GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDN 537
            D  I  F +PK   V +N+WA+  D++ WD P  F+PERFL   GS+      ++  +PFGAG R C G  LA + L + +  L+  FD+ + +
Sbjct:  377 DSSIGEFAIPKDTHVIINLWALHHDKNEWDQPDRFMPERFLDPTGSHLITPTPSY--LPFGAGPRSCIGEALARQELFIFMALLLQRFDFDVSD 468          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP2R1_HUMAN (Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  223 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNM-DMEDKFGLTVQ 537
            D  + G+++PKG  V  N++++  DE  W +P  F PERFL S+  F  +   L+PF  GRR C G  LA   + L   +L+  F     +  + D++ + G+T+Q
Sbjct:  386 DAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYF-AKKEALVPFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPHELVPDLKPRLGMTLQ 490          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP2DA_RAT (Cytochrome P450 2D10 OS=Rattus norvegicus GN=Cyp2d10 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = -3
Query:  271 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 537
            D+E+  F +PKG  + +N+ ++ +DE+ W+ P  F PE FL +  +F  ++   +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  384 DIEVQDFVIPKGTTLIINLSSVLKDETVWEKPLRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQHFSFSV 471          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP2DG_CAVPO (Cytochrome P450 2D16 OS=Cavia porcellus GN=CYP2D16 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = -3
Query:  271 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 537
            D E+ GF +PKG  +F N+ ++ +DE+ W+ P  F P  FL +   F  +    +PF AG RIC G PLA   L L   SL+  F + +
Sbjct:  384 DTEVQGFLIPKGTMLFTNLSSVLKDETVWEKPLHFHPGHFLDAEGRFVKRE-AFMPFSAGPRICLGEPLARMELFLFFTSLLQRFSFSV 471          
BLAST of CF835136 vs. ExPASy Swiss-Prot
Match: CP1A1_RABIT (Cytochrome P450 1A1 OS=Oryctolagus cuniculus GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 39/113 (34.51%), Postives = 58/113 (51.33%), Query Frame = -3
Query:  205 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL-GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQKAQPLH 537
            D  + GF +PKG  VFVN W    D   W +P  F PERFL  S A  K    +++ FG G+R C G  +    + L L +L+   ++ +     +DM   +GLT++ A+  H
Sbjct:  397 DTSLGGFYIPKGRCVFVNQWQNNHDPELWGDPEAFRPERFLTPSGAVDKALTEKVLLFGLGKRKCIGETIGRLEVFLFLATLLQQVEFSVSPGTTVDMTPIYGLTMKHARCEH 509          
The following BLAST results are available for this feature:
BLAST of CF835136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
CP1A1_FELCA4.728e-1134.51Cytochrome P450 1A1 OS=Felis catus GN=CYP1A1 PE=2 ... [more]
CP17A_PANTR4.728e-1140.23Steroid 17-alpha-hydroxylase/17,20 lyase OS=Pan tr... [more]
CP17A_MOUSE4.728e-1137.23Steroid 17-alpha-hydroxylase/17,20 lyase OS=Mus mu... [more]
CP2R1_HUMAN6.175e-1133.96Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1... [more]
CP2DA_RAT6.175e-1135.96Cytochrome P450 2D10 OS=Rattus norvegicus GN=Cyp2d... [more]
CP2DG_CAVPO8.065e-1138.20Cytochrome P450 2D16 OS=Cavia porcellus GN=CYP2D16... [more]
CP1A1_RABIT8.065e-1134.51Cytochrome P450 1A1 OS=Oryctolagus cuniculus GN=CY... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835136 ID=CF835136; Name=CF835136; organism=Citrus sinensis; type=EST; length=596bp
TAAATCGCATGACTTTATAGTCCACTTGAAGATTAACTCTGTTAAGTTGC
GTGTCTACATAAAACCAAATAAGAGCGCCCACACCTGAGAATGATTACAC
ACACATATAACTAACCACCAAGCGCTTTATATAGTGGCTACCACCAAGCG
CTTTATATATTGGCTACGAACTATAGTATAGAACTAGATGGCACCAGGGA
CAGCATGAAGGGGTTGAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCC
ATGTCCATGTTGTGGTTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGA
ACCCAACATTAGATGTAACATTCTGATTGCCAATGGTAAACCAGGACAAA
TTCGTCGTCCAGCTCCGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAA
TCAGCATTTGACCCTAAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTC
CCATGTGCTTTCATCTCTGCCAATAGCCCATACATTGACAAAAACTTGTG
CACCTTTTGGCACTGTGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTG
CGGGGAAGTAATAAGGGAGCTGCAGGGTGCAATCTCAAAGTTTCTT
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