CF835140

Overview
NameCF835140
Unique NameCF835140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835140 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.589e-27
Identity = 82/250 (32.80%), Postives = 127/250 (50.80%), Query Frame = 1
Query:   37 RPLLSGIVTNQQTCFDELV--DSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLXXXXXXXXXXXXWFLKNTNRFREPLE--TLIKDIRKAPCHDCH-------KGERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFXXXXXXXXXXXXXXXPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRC 753
            + L+S  +TNQ+TC D     D+   +   L +   +V  + S +L ++ +  D ++                N  + +E  +  T+  DI  A   D          G+R L  ++ +G+  + +V     GT  F T+  A+A +P NS      +                K KKN++ +GDG  RT+ITG+ +V+DG TTF+S+T A  GERF+A D+TF+NTAGP+KHQAVALR  +D S+FY C
Sbjct:  165 KTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMIKNMTDTDIANFEQKAK-----ITSNNRKLKEENQETTVAVDIAGAGELDSEGWPTWLSAGDRRL--LQGSGVKADATVAADGSGT--FKTVAAAVAAAPENSNKR---YVIHIKAGVYRENVEVAKKKKNIMFMGDGRTRTIITGSRNVVDGSTTFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYNC 402          
BLAST of CF835140 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.416e-27
Identity = 63/128 (49.22%), Postives = 82/128 (64.06%), Query Frame = 1
Query:  382 VIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFXXXXXXXXXXXXXXXPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEG 765
            V+V+  G+ NFTT+G A+A + ++S      F                K K NL+ IGDGI +T I GN SV+DGWTTF SST AV G  F+A  ++F+N AGP+KHQAVALR+ AD S+FY+CSF G
Sbjct:   10 VVVAKDGSGNFTTVGAAVAAAKDSSTAR---FVIYIKEGAYFEYVDVDKKKTNLMFIGDGIGKTWIKGNRSVVDGWTTFRSSTVAVVGTGFIARGISFENYAGPSKHQAVALRSGADFSAFYQCSFVG 134          
BLAST of CF835140 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.532e-27
Identity = 83/241 (34.44%), Postives = 124/241 (51.45%), Query Frame = 1
Query:   37 RPLLSGIVTNQQTCFDELV--DSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLXXXXXXXXXXXXWFLKNTNRFREPLETLIKDIRKAPCHDCHKGERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFXXXXXXXXXXXXXXXPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRC 753
            + L+S  +TNQ TC D     D+   +   L +   +V ++ S +L ++ +  D ++              ++ +N  +   ET   D   A       G+R L +  S    V  +V+V+  G+ NF T+  ++A +P        Y                 KHK N++ IGDG  RT+ITG+ +V+DG TTF S+T AV GE F+A D+TF+NTAGP+KHQAVALR  ADLS+FY C
Sbjct:  176 KTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMM------------IMRTSNNRKLIEETSTVDGWPAWLST---GDRRLLQSSS----VTPNVVVAADGSGNFKTVAASVAAAPQGGTKR--YIIRIKAGVYRENVEVTKKHK-NIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNC 394          
BLAST of CF835140 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.532e-27
Identity = 83/241 (34.44%), Postives = 123/241 (51.04%), Query Frame = 1
Query:   37 RPLLSGIVTNQQTCFDELV--DSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLXXXXXXXXXXXXWFLKNTNRFREPLETLIKDIRKAPCHDCHKGERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFXXXXXXXXXXXXXXXPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRC 753
            + L+S  +TNQ TC D     D+   +   L +   +V ++ S +L ++ +  D ++              ++ +N  +   ET   D   A       G+R L +  S    V  + +V+  G+ NF T+  A+A +P        Y                 KHK N++ IGDG  RT+ITG+ +V+DG TTF S+T AV GE F+A D+TF+NTAGP+KHQAVALR  ADLS+FY C
Sbjct:  176 KTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMM------------IMRTSNNRKLTEETSTVDGWPAWLSP---GDRRLLQSSS----VTPNAVVAADGSGNFKTVAAAVAAAPQGGTKR--YIIRIKAGVYRENVEVTKKHK-NIMFIGDGRTRTIITGSRNVVDGSTTFKSATAAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNC 394          
BLAST of CF835140 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.328e-26
Identity = 78/242 (32.23%), Postives = 122/242 (50.41%), Query Frame = 1
Query:   37 RPLLSGIVTNQQTCFDELV--DSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLXXXXXXXXXXXXWFLKNTNRFREPLETLIKDIRKAPCHD-CHKGERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFXXXXXXXXXXXXXXXPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRC 753
            + L+S  +TNQ TC D     D+   +   L +   +V  + S +L ++ +  + ++             F  N NR    L+ +  D+           G+R L +    G  +     V+  G+ +FTT+  A+A +P  S      F                K K N++ +GDG  +T+ITG+ +V+DG TTF+S+T A  GERF+A D+TF+NTAGP+KHQAVALR  +D S+FY+C
Sbjct:  168 KTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIKNMTETDIANFELRDKSST--FTNNNNR---KLKEVTGDLDSDGWPKWLSVGDRRLLQ----GSTIKADATVADDGSGDFTTVAAAVAAAPEKSNKR---FVIHIKAGVYRENVEVTKKKTNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQC 397          
BLAST of CF835140 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.420e-25
Identity = 78/249 (31.33%), Postives = 117/249 (46.99%), Query Frame = 1
Query:   16 MNSWTESRPLLSGIVTNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLXXXXXXXXXXXXWFLKNTNRFREPLETLIKDIRKAPCHDCHKGERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFXXXXXXXXXXXXXXXPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFE 762
            + S++     LS ++TN  TC + + D       ++   L ++     V+L +    L                     +NRF   L  L               +R L E     + V  +V+V+  GT  F T+ +A+A +P NS      +                K KKNL+L+GDG + T+ITG+ +VIDG TTF S+T A +G+ F+A D+ F+NTAGPAKHQAVALR +AD +   RC  +
Sbjct:  151 LESYSNVHTWLSSVLTNYMTCLESISDVSVNSKQIVKPQLEDLVSRARVALAIFVSVLPARDDLKMII-----------SNRFPSWLTAL---------------DRKLLESSPKTLKVTANVVVAKDGTGKFKTVNEAVAAAPENSNTR---YVIYVKKGVYKETIDIGKKKKNLMLVGDGKDATIITGSLNVIDGSTTFRSATVAANGDGFMAQDIWFQNTAGPAKHQAVALRVSADQTVINRCRID 370          
BLAST of CF835140 vs. ExPASy Swiss-Prot
Match: PME36_ARATH (Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.423e-25
Identity = 80/260 (30.77%), Postives = 118/260 (45.38%), Query Frame = 1
Query:   37 RPLLSGIVTNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLXXXXXXXXXXXXWFLKNTNRFREPLE---------TLIKDIRKAPCHDCHKGERNLGEVESNGILV--------NQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFXXXXXXXXXXXXXXXPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEG 765
            R  LSG++ N  TC D L+  + G   +++   SNVT +   +L                       ++ K+    ++ L          T  K     P H   +          NG ++            +V+  G+    TI  A+A      K                      +H KN++L+GDG++RT++T N +V DG TT+ S+TF VSG+ F A D+TF+NTAGP KHQAVALR ++DLS FYRCSF+G
Sbjct:   99 RTWLSGVLANHHTCLDGLIQQRQGHKPLVH---SNVTFVLHEALA----------------------FYKKSRGHMKKRLHGPARQGHGPTRPKHRPTRPNHGPGRSHHGPSRPNQNGGMLVSWNPTSSRADFVVARDGSATHRTINQALAAVSRMGKSRLNRVIIYIKAGVYNEKIEIDRHMKNIMLVGDGMDRTIVTNNRNVPDGSTTYGSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSLFYRCSFKG 333          
BLAST of CF835140 vs. ExPASy Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.398e-25
Identity = 59/131 (45.04%), Postives = 80/131 (61.07%), Query Frame = 1
Query:  373 NQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFXXXXXXXXXXXXXXXPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEG 765
            N ++ V+  GT NFTTI DA+  +PN S+     F               PK K  ++ IGDGI +TVI  N S IDGW+TF + T  V G+ ++A D++F N+AGPAK QAVA R+ +D S+FYRC F+G
Sbjct:  219 NYNLSVAIDGTGNFTTINDAVFAAPNMSETR---FIIYIKGGEYFENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTPTVGVKGKGYIAKDISFVNSAGPAKAQAVAFRSGSDHSAFYRCEFDG 346          
BLAST of CF835140 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.795e-24
Identity = 57/128 (44.53%), Postives = 81/128 (63.28%), Query Frame = 1
Query:  370 VNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFXXXXXXXXXXXXXXXPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRC 753
            V  +V+V+  G+ ++ T+ +A+A +P +SK     +               PK KKN++ +GDG   T+IT + +V DG TTFNS+T A  G  F+A D+TF+NTAG AKHQAVALR  +DLS+FYRC
Sbjct:    5 VTPNVVVAADGSGDYKTVSEAVAAAPEDSKTR---YVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRC 129          
BLAST of CF835140 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.868e-23
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 1
Query:  526 KHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEG 765
            K  KN+++IGDGI+ T++TGN +V DG TTF S+TFAVSG  F+A  +TF+NTAGP KHQAVALR+++D S FY CSF+G
Sbjct:  298 KSIKNVMVIGDGIDSTIVTGNRNVQDGTTTFRSATFAVSGNGFIAQGITFENTAGPEKHQAVALRSSSDFSVFYACSFKG 377          
The following BLAST results are available for this feature:
BLAST of CF835140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
PME3_ARATH2.589e-2732.80Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME_ACTDE4.416e-2749.22Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME3_CITSI7.532e-2734.44Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI7.532e-2734.44Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME2_ARATH8.328e-2632.23Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME18_ARATH1.420e-2531.33Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME36_ARATH2.423e-2530.77Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME39_ARATH5.398e-2545.04Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME_DAUCA7.795e-2444.53Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME6_ARATH3.868e-2362.50Probable pectinesterase/pectinesterase inhibitor 6... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835140 ID=CF835140; Name=CF835140; organism=Citrus sinensis; type=EST; length=765bp
CTGAGTCGATGACGGATGAATTCGTGGACAGAGTCACGACCTCTGCTGAG
TGGGATCGTCACGAATCAGCAGACTTGCTTTGACGAGCTTGTGGATTCGA
AGAGCGGCATTGCTGCTGTGCTGTATGAGCCGCTGTCGAATGTGACTCGT
TTGTACAGTGTTTCGCTTGGGCTCGTGACCCACGCACTGGACCGGAATTT
GAGGCGGAATAAGAAGCGAAGCAAACGGTCCAAGAATTGGTTTTTGAAGA
ACACGAACCGGTTTCGTGAACCGCTCGAGACTCTTATCAAGGATATAAGA
AAGGCACCTTGCCATGATTGCCACAAAGGAGAAAGAAATCTTGGTGAAGT
GGAGAGCAATGGAATTCTTGTAAACCAAAGTGTGATAGTGAGCCCACATG
GGACTGATAATTTCACAACAATCGGGGATGCCATTGCATTTTCTCCCAAT
AACTCCAAGCCCGAAGATGGGTATTTTGTTATCTATGCACGAGAAGCTGT
TTACGAAGAATACGTGGTTGTTCCTAAGCATAAGAAGAATCTCTTGCTCA
TTGGTGATGGCATCAATCGGACTGTCATTACTGGAAATCACAGTGTCATT
GATGGCTGGACTACTTTCAATTCTTCAACTTTCGCTGTTTCTGGTGAGAG
ATTTGTAGCGGTAGATGTTACATTTAAGAACACAGCTGGTCCTGCAAAGC
ACCAAGCAGTAGCTCTGAGGAACAATGCTGATCTCTCATCATTCTACCGT
TGCAGTTTTGAAGGC
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