CF835141

Overview
NameCF835141
Unique NameCF835141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835141 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 49/182 (26.92%), Postives = 79/182 (43.41%), Query Frame = -2
Query:  158 CSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWL 703
            C F G+QDTL       F++ C I GT DFIFG  A+++    ++A   + +    + A  R    +  G +  +C +               T  YLGR W    + VY  + +  +++P GW E        T++YGE+   GPG++   RV       ++  +A  F    +  G  WL
Sbjct:  190 CRFYGFQDTLCDDRGNHFFKNCYIEGTYDFIFGRGASLYLTTQLHA---VGDGLRVIAAHNRQSTTEQNGYSFVHCKVTGVG-----------TGIYLGRAWMSHPKVVYSYTEMSSVVNPSGWQENRVRAHDKTVFYGEYMCTGPGSHKAKRVAHT--QDIDNKEASQFLTLGYIKGSKWL 355          
BLAST of CF835141 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 51/183 (27.87%), Postives = 88/183 (48.09%), Query Frame = -2
Query:  158 CSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGTVGLD-TLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWL 703
            C F GYQDT+   +   F+++C I GT DFIFG+  +++    +     + +    +TA       + +G +  +C +            T T + YLGR W    + VY  + +  +++P GW E N   G D T++YGE++  G G++   RVK+     ++  +A  F    +  G +WL
Sbjct:  167 CKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLYLGTQL---NVVGDGIRVITAHAGKSAAEKSGYSFVHCKV----------TGTGTGI-YLGRSWMSHPKVVYAYTDMSSVVNPSGWQE-NREAGRDKTVFYGEYKCTGTGSHKEKRVKYT--QDIDDIEAKYFISLGYIQGSSWL 332          
BLAST of CF835141 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 44/182 (24.18%), Postives = 81/182 (44.51%), Query Frame = -2
Query:  158 CSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWL 703
            C F G+QDT+   +   F+++C + GT DFIFG+  +++    ++    + +    + A       + +G +  +C +                  YLGR W    + VY  + +  +++P GW E        T++YGE++  GPG++   RV  P    ++  +A  F    +  G  WL
Sbjct:  190 CKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHV---VGDGIRVIAAHAGKSAEEKSGYSFVHCKVTGTGGGI-----------YLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRV--PFTQDIDDKEANRFLSLGYIQGSKWL 355          
BLAST of CF835141 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 44/182 (24.18%), Postives = 81/182 (44.51%), Query Frame = -2
Query:  158 CSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWL 703
            C F G+QDT+   +   F+++C + GT DFIFG+  +++    ++    + +    + A       + +G +  +C +                  YLGR W    + VY  + +  +++P GW E        T++YGE++  GPG++   RV  P    ++  +A  F    +  G  WL
Sbjct:  190 CKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHV---VGDGIRVIAAHAGKSAEEKSGYSFVHCKVTGTGGGI-----------YLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRV--PFTQDIDDKEANCFLSLGYIQGSKWL 355          
BLAST of CF835141 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 53/176 (30.11%), Postives = 84/176 (47.73%), Query Frame = -2
Query:  251 SFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYAR----KPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPW--------------KEFSRTVYMQSYIGDLISPVGWLEWNG-TVGLDTLYYG-------EFRNYGPGANTT 700
            S  GYQDTLYV   R F+ +C I GTVDFIFG+  A+F NC++ +R        N    +TA   T+ NQ  G+ I N  ++      ++ +S       LGRPW                  +TV++ + + + I   GW + +G     +T+++        E+++YG GA  +
Sbjct:  172 SLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVI------RESDSVPAKSYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVS 338          
BLAST of CF835141 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 53/173 (30.64%), Postives = 83/173 (47.98%), Query Frame = -2
Query:  260 SFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYAR----KPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPW--------------KEFSRTVYMQSYIGDLISPVGWLEWNG-TVGLDTLYYG-------EFRNYGPGA 700
            S  GYQDTLYV   R F+ +C I GTVDFIFG+  A+F NC++ +R        N    +TA   T+ NQ  G+ I N  ++      ++ +S       LGRPW                  +TV++ + + + I   GW + +G     +T+++        E+++YG GA
Sbjct:  172 SLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVI------RESDSVPAKSYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGA 335          
The following BLAST results are available for this feature:
BLAST of CF835141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PME49_ARATH3.369e-1526.92Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME63_ARATH5.747e-1527.87Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]
PPME1_ARATH2.184e-1424.18Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME48_ARATH4.865e-1424.18Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PMEA_DICD34.553e-1230.11Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PMEA_ERWCH5.947e-1230.64Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835141 ID=CF835141; Name=CF835141; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTCTTTTTGACAATAAAAGAGAGAGTCAGCTACATTTATTTT
TTGAATAAATCATTAGAAAGTTATACACTAAACACAAATGAATGAGATGA
GATTTAGTTACCACCGCTAACAACTAATCCTCCACAAAAAGGAATATCAG
TATCAGGCAACCAAGTGTCTCCCATGGTGAAATTGTAAACTGTAAAATTC
AGAGCCTGTGAAGCATTCATGAGACTGTAACCGGGCCACTTCACTCTCAT
TGTAGTATTAGCTCCAGGGCCATAATTCCGAAACTCACCATAATACAAAG
TATCCAACCCAACCGTTCCATTCCATTCAAGCCACCCAACAGGACTTATC
AAATCTCCAATGTAAGATTGCATGTAAACTGTCCTGGAAAATTCTTTCCA
GGGCCTGCCCAGATAGTTTAATGTCGTCGCCGTGGAGTTCAAGTCCTTGG
CAAAATCTGGGGCAGCAACAATGGAGCAATTTTGTATGGCAATGCCAGTG
TTCTGATTGGGATCAGTTCTTCCCTGAGCTGTTACCGCATTCTTCTGATT
CGGCATCGGTTTTCGAGCGTATATGTTACAGTTCTGGAAGACTGCAGCTG
CATTGCCAAATATGAAATCAACGGTGCCATAAATGTCACATTCTCTGTAA
AATTGCCTTAGTGAATGGACATAAAGAGTGTCTTGGTAGCCTTCAAAACT
GCAACGG
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