CF835142

Overview
NameCF835142
Unique NameCF835142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length479
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:476..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.676e-27
Identity = 58/103 (56.31%), Postives = 70/103 (67.96%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            ++SH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:  132 VVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.676e-27
Identity = 58/103 (56.31%), Postives = 70/103 (67.96%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            ++SH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:  132 VVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.676e-27
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = -2
Query:  170 TRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 448
            T ++LPSG  K +P+  RA IG  AG GR EKP++KAG AYHK++VK   WP+VRGVAMN V+HP GGG HQH G  STV R APPG+KVG I
Sbjct:  136 TILRLPSGKDKEVPNDSRATIGIPAGAGRIEKPIMKAGFAYHKWKVKARKWPRVRGVAMNAVDHPFGGGRHQHKGRPSTVARTAPPGRKVGHI 228          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METVS (50S ribosomal protein L2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.189e-27
Identity = 58/103 (56.31%), Postives = 71/103 (68.93%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            +++H  D   T VKLPSG  K++   CRA IG VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R+  PG+KVG I
Sbjct:  132 VVAH--DIGKTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRNTSPGRKVGHI 232          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METVA (50S ribosomal protein L2P OS=Methanococcus vannielii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.189e-27
Identity = 58/103 (56.31%), Postives = 71/103 (68.93%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            +++H  D   T VKLPSG  K++   CRA IG VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R+  PG+KVG I
Sbjct:  132 VVAH--DIGKTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRNTSPGRKVGHI 232          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.189e-27
Identity = 58/91 (63.74%), Postives = 68/91 (74.73%), Query Frame = -2
Query:  170 VKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 442
            ++LPSG  K + +  RA IG  AG GR EKPLLKAGNAY+K++ K   WP VRGVAMN V HPHGGGNHQ  G+ +TV R+APPGQKVG I
Sbjct:  142 IQLPSGKVKQVNAKARATIGIAAGAGRDEKPLLKAGNAYYKWKAKAKKWPVVRGVAMNAVNHPHGGGNHQSPGYPTTVARNAPPGQKVGHI 232          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 2.860e-27
Identity = 57/101 (56.44%), Postives = 71/101 (70.30%), Query Frame = -2
Query:  176 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 478
            +++H  + D T V+LPSG  K +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDA PG+KVG
Sbjct:  129 LVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVG 227          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.860e-27
Identity = 57/101 (56.44%), Postives = 71/101 (70.30%), Query Frame = -2
Query:  176 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 478
            +++H  + D T V+LPSG  K +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDA PG+KVG
Sbjct:  129 LVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVG 227          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.860e-27
Identity = 57/95 (60.00%), Postives = 67/95 (70.53%), Query Frame = -2
Query:  176 DNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 460
            D D   V+LPSG  K +   CRA IG VAGGGRTEKP +KAGN YHK + +   +P+VRGVAMN V+HP GGG  QH G   +V RDAPPG+KVG
Sbjct:  133 DRDVAVVQLPSGEVKRLDPQCRATIGVVAGGGRTEKPFVKAGNKYHKMKARGTKYPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVG 227          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METJA (50S ribosomal protein L2P OS=Methanocaldococcus jannaschii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 6.370e-27
Identity = 61/104 (58.65%), Postives = 72/104 (69.23%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGLI 478
            I++H  D + T VKLPSG  K + S CRA IG VAGGGR EKP +KAG  YH  + K   WP+VRGVAMN V+HP GGG HQH G  +TV R+  PPG+KVG I
Sbjct:  132 ILTH--DGERTYVKLPSGHIKALHSMCRATIGVVAGGGRKEKPFVKAGKKYHAMKAKAVKWPRVRGVAMNAVDHPFGGGRHQHTGKPTTVSRKKVPPGRKVGHI 233          
The following BLAST results are available for this feature:
BLAST of CF835142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RL2_METM71.676e-2756.3150S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM61.676e-2756.3150S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_AERPE1.676e-2762.3750S ribosomal protein L2P OS=Aeropyrum pernix GN=r... [more]
RL2_METVS2.189e-2756.3150S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_METVA2.189e-2756.3150S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_IGNH42.189e-2763.7450S ribosomal protein L2P OS=Ignicoccus hospitalis... [more]
RL2_HALSA2.860e-2756.4450S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_HALS32.860e-2756.4450S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_HALLT2.860e-2760.0050S ribosomal protein L2P OS=Halorubrum lacusprofu... [more]
RL2_METJA6.370e-2758.6550S ribosomal protein L2P OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835142 ID=CF835142; Name=CF835142; organism=Citrus sinensis; type=EST; length=479bp
AAGATTNAAATTTGAANAAATTTTTCTAAGGTAATGATGCAGCAGGAAAA
GTAAAATGACAGATCGCGATAGAGAGACGATTTGTTGTAACACAAAGGAT
TTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGTCCTCTGAGCC
GACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCCAGGAGGAGCA
TCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGTTACCTCCTCC
ATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACCTTAGGCCAGC
AGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGCTTTGAGAAGG
GGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCATCGCTCTGCA
GCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTGACCCTGGTGG
TGTCATTATCGGGGTTATGACTGATGATA
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