CF835142
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.735e-24 Identity = 54/91 (59.34%), Postives = 63/91 (69.23%), Query Frame = -2 Query: 170 VKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 442 ++LPSG K I +G VAGGG EKPLLKAGN Y K++VK WP VRGVAMN V HPHGGG HQ + +STV R+ PPG+KVG I Sbjct: 137 LRLPSGKIKEIDENALVTVGTVAGGGVLEKPLLKAGNNYWKYKVKATKWPDVRGVAMNVVSHPHGGGLHQSVSRSSTVARNTPPGRKVGHI 227
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.735e-24 Identity = 51/95 (53.68%), Postives = 62/95 (65.26%), Query Frame = -2 Query: 170 DTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 454 D VK+PSG K S C A +G VAGGGR EKP +KAG +HK + + WP+VRGVAMN ++HP GGG HQH G TV R PG+KVG + Sbjct: 135 DRVGVKMPSGKMKWFSSRCLATVGVVAGGGRGEKPFVKAGKKFHKVKSQATYWPRVRGVAMNVIDHPFGGGGHQHTGRPKTVSRGTSPGRKVGSV 229
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.735e-24 Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = -2 Query: 170 VKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 442 V++PSG K C A +G VAGGGR +KP+LKAG YHK + WP+VRGVAMN ++HP GGG HQH G TV R A PG+KVG + Sbjct: 141 VRMPSGKPKWFNEACLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDHPFGGGGHQHPGKPKTVARGASPGRKVGSV 231
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METST (50S ribosomal protein L2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl2p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.266e-24 Identity = 56/103 (54.37%), Postives = 67/103 (65.05%), Query Frame = -2 Query: 170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478 +I+H D D T +++PSG K RA +G VAGGGR EKP LKAGN YH + K VRGVAMN V+HPHGGGN QH G +T+ R AP G+KVG I Sbjct: 132 LITH--DVDKTMIEMPSGELKAFNPRSRATVGVVAGGGRKEKPFLKAGNRYHALKAKGKKMMTVRGVAMNAVDHPHGGGNRQHPGRPTTISRHAPAGRKVGSI 232
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.266e-24 Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = -2 Query: 170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478 II+H D T V+LPSG + CRA IG ++GGG+ EKP +KAG Y+ R K WPKVRGVAMN V+HP GGGNHQ G +T+ R PPG+KVG I Sbjct: 132 IIAH--DVGRTYVQLPSGKVRTFDPRCRATIGVMSGGGKREKPFVKAGKKYYHMRSKGGKWPKVRGVAMNAVDHPFGGGNHQSPGKPTTIARGDPPGRKVGHI 232
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_THEGJ (50S ribosomal protein L2P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl2p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.959e-24 Identity = 56/97 (57.73%), Postives = 64/97 (65.98%), Query Frame = -2 Query: 170 DNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 460 + D V+LPSG K CRA IG VAGGGR EKP++KAG AY+ + + WPK RGV MN V HPHGG H HIG STV R APPG+KVG I Sbjct: 135 ERDKVIVQLPSGELKQFKPECRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PYRKO (50S ribosomal protein L2P OS=Pyrococcus kodakaraensis GN=rpl2p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.959e-24 Identity = 56/97 (57.73%), Postives = 64/97 (65.98%), Query Frame = -2 Query: 170 DNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 460 + D V+LPSG K CRA IG VAGGGR EKP++KAG AY+ + + WPK RGV MN V HPHGG H HIG STV R APPG+KVG I Sbjct: 135 EKDKVIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.959e-24 Identity = 51/91 (56.04%), Postives = 62/91 (68.13%), Query Frame = -2 Query: 170 VKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 442 V++PSG+ K CRA IG VAGGGR+EKP +KAG YHK + + WP+VRG AMN ++HP GGG HQH G TV R PG+KVG I Sbjct: 138 VRMPSGSTKWFNGQCRATIGIVAGGGRSEKPFVKAGKKYHKMKNTASNWPRVRGFAMNVIDHPFGGGGHQHAGRPKTVSRGTSPGRKVGHI 228
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_THEON (50S ribosomal protein L2P OS=Thermococcus onnurineus (strain NA1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 5.048e-24 Identity = 56/97 (57.73%), Postives = 64/97 (65.98%), Query Frame = -2 Query: 170 DNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 460 + D V+LPSG K CRA IG VAGGGR EKP++KAG AY+ + + WPK RGV MN V HPHGG H HIG STV R APPG+KVG I Sbjct: 135 EKDKVIVQLPSGELKQFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METMA (50S ribosomal protein L2P OS=Methanosarcina mazei GN=rpl2p PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.469e-23 Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = -2 Query: 170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478 +++H P T V +PSG K + CRA++G VAGGGR ++P LKAG YHK + + +P+V VAMNP +HP GGG +H G +TV R+APPG+KVGLI Sbjct: 129 VVTHEPTR--TAVSMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229 The following BLAST results are available for this feature:
BLAST of CF835142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835142 ID=CF835142; Name=CF835142; organism=Citrus sinensis; type=EST; length=479bpback to top |