CF835142

Overview
NameCF835142
Unique NameCF835142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length479
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:476..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.469e-23
Identity = 50/93 (53.76%), Postives = 61/93 (65.59%), Query Frame = -2
Query:  176 DTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 454
            D   V++PSG  K   + CRA +G VAGGGR EKP +KAGN  HK R   + WP+VRGVAMN ++HP GGG HQH G   T+ R   PG+ VG
Sbjct:  134 DRIGVRMPSGKTKWFNARCRATVGIVAGGGRVEKPFVKAGNKSHKMRNTASNWPRVRGVAMNVIDHPFGGGGHQHPGRPKTIARGTSPGRTVG 226          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.505e-23
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  170 VKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 442
            V++PSG  K     CRA IG VAGGGR ++P LKAG  YHK + +   +P+V G+AMN V+HP GGGN +H G  +TV R+APPG+KVG I
Sbjct:  139 VRMPSGVLKWFHPKCRATIGIVAGGGRVDRPFLKAGKKYHKMKARAAKYPRVSGIAMNVVDHPFGGGNRKHPGKPTTVSRNAPPGRKVGHI 229          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.272e-23
Identity = 53/91 (58.24%), Postives = 62/91 (68.13%), Query Frame = -2
Query:  170 VKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 442
            +KL S     +    RA +G +AGGG  EKPLLKAGN Y K+RV+   WP VRGVAMN V HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  137 IKLSSEKIVEVSQNARATVGIIAGGGFVEKPLLKAGNNYWKYRVRAVKWPVVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.581e-23
Identity = 53/97 (54.64%), Postives = 62/97 (63.92%), Query Frame = -2
Query:  170 DNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 460
            + D   V+LPSG  K     CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG I
Sbjct:  135 EKDKVIVQLPSGELKAFDPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PYRFU (50S ribosomal protein L2P OS=Pyrococcus furiosus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.289e-23
Identity = 55/103 (53.40%), Postives = 65/103 (63.11%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            ++S  PD     V+LPSG  K     CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG I
Sbjct:  131 VVSREPDK--VIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.289e-23
Identity = 54/103 (52.43%), Postives = 67/103 (65.05%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            +I   P+ + T ++LPSG    + S  RA +G VAGGGR EKP LKAG  YH+ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG I
Sbjct:  128 VIGQKPEENKTIIRLPSGRTVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 228          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PYRAB (50S ribosomal protein L2P OS=Pyrococcus abyssi GN=rpl2p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.289e-23
Identity = 53/97 (54.64%), Postives = 62/97 (63.92%), Query Frame = -2
Query:  170 DNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 460
            + D   V+LPSG  K     CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG I
Sbjct:  135 EKDKVIVQLPSGELKAFNPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNRFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.243e-22
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  176 NDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 457
            + TT V+LPSG    + S  RA IG VAGGGR EKP +KAGN YH+ R K   +PKVRG AM+   HPHGGG+HQ  G  + V+++APPGQKVG
Sbjct:  137 DSTTLVQLPSGRMIEVDSRARATIGIVAGGGRIEKPFVKAGNKYHRARTKAWKYPKVRGKAMSAYAHPHGGGSHQQGG--TPVKKNAPPGQKVG 228          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PYRCJ (50S ribosomal protein L2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.770e-22
Identity = 54/103 (52.43%), Postives = 67/103 (65.05%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            +I   P+ + T V+LPSG    + +  RA IG VAGGGR EKP +KAG  YH+ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG I
Sbjct:  126 VIGQRPEENKTIVRLPSGRVIEVDARGRATIGIVAGGGRVEKPFVKAGKKYHRARAKSWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 226          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PYRAR (50S ribosomal protein L2P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.617e-22
Identity = 52/103 (50.49%), Postives = 67/103 (65.05%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            ++   P+ + T ++LPSG    + +  RA +G VAGGGR EKP LKAG  YH+ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG I
Sbjct:  128 VVGQKPEENKTIIRLPSGRVIEVDARGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 228          
The following BLAST results are available for this feature:
BLAST of CF835142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RL2_METB61.469e-2353.7650S ribosomal protein L2P OS=Methanoregula boonei ... [more]
RL2_METBU2.505e-2354.9550S ribosomal protein L2P OS=Methanococcoides burt... [more]
RL2_SULAC3.272e-2358.2450S ribosomal protein L2P OS=Sulfolobus acidocalda... [more]
RL2_PYRHO5.581e-2354.6450S ribosomal protein L2P OS=Pyrococcus horikoshii... [more]
RL2_PYRFU7.289e-2353.4050S ribosomal protein L2P OS=Pyrococcus furiosus G... [more]
RL2_PYRAE7.289e-2352.4350S ribosomal protein L2P OS=Pyrobaculum aerophilu... [more]
RL2_PYRAB7.289e-2354.6450S ribosomal protein L2P OS=Pyrococcus abyssi GN=... [more]
RL2_CALMQ1.243e-2257.4550S ribosomal protein L2P OS=Caldivirga maquilinge... [more]
RL2_PYRCJ2.770e-2252.4350S ribosomal protein L2P OS=Pyrobaculum calidifon... [more]
RL2_PYRAR3.617e-2250.4950S ribosomal protein L2P OS=Pyrobaculum arsenatic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835142 ID=CF835142; Name=CF835142; organism=Citrus sinensis; type=EST; length=479bp
AAGATTNAAATTTGAANAAATTTTTCTAAGGTAATGATGCAGCAGGAAAA
GTAAAATGACAGATCGCGATAGAGAGACGATTTGTTGTAACACAAAGGAT
TTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGTCCTCTGAGCC
GACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCCAGGAGGAGCA
TCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGTTACCTCCTCC
ATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACCTTAGGCCAGC
AGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGCTTTGAGAAGG
GGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCATCGCTCTGCA
GCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTGACCCTGGTGG
TGTCATTATCGGGGTTATGACTGATGATA
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