CF835142
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.469e-23 Identity = 50/93 (53.76%), Postives = 61/93 (65.59%), Query Frame = -2 Query: 176 DTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 454 D V++PSG K + CRA +G VAGGGR EKP +KAGN HK R + WP+VRGVAMN ++HP GGG HQH G T+ R PG+ VG Sbjct: 134 DRIGVRMPSGKTKWFNARCRATVGIVAGGGRVEKPFVKAGNKSHKMRNTASNWPRVRGVAMNVIDHPFGGGGHQHPGRPKTIARGTSPGRTVG 226
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 2.505e-23 Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = -2 Query: 170 VKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 442 V++PSG K CRA IG VAGGGR ++P LKAG YHK + + +P+V G+AMN V+HP GGGN +H G +TV R+APPG+KVG I Sbjct: 139 VRMPSGVLKWFHPKCRATIGIVAGGGRVDRPFLKAGKKYHKMKARAAKYPRVSGIAMNVVDHPFGGGNRKHPGKPTTVSRNAPPGRKVGHI 229
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 3.272e-23 Identity = 53/91 (58.24%), Postives = 62/91 (68.13%), Query Frame = -2 Query: 170 VKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 442 +KL S + RA +G +AGGG EKPLLKAGN Y K+RV+ WP VRGVAMN V HPHGGG HQ + STV R+APPG+KVG I Sbjct: 137 IKLSSEKIVEVSQNARATVGIIAGGGFVEKPLLKAGNNYWKYRVRAVKWPVVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 5.581e-23 Identity = 53/97 (54.64%), Postives = 62/97 (63.92%), Query Frame = -2 Query: 170 DNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 460 + D V+LPSG K CRA IG VAGGGR EKPL+KAG AY+K++ + WP RGV MN V HP GG H H G +T R APPG+KVG I Sbjct: 135 EKDKVIVQLPSGELKAFDPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PYRFU (50S ribosomal protein L2P OS=Pyrococcus furiosus GN=rpl2p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 7.289e-23 Identity = 55/103 (53.40%), Postives = 65/103 (63.11%), Query Frame = -2 Query: 170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478 ++S PD V+LPSG K CRA IG VAGGGR EKPL+KAG AY+K++ + WP RGV MN V HP GG H H G +T R APPG+KVG I Sbjct: 131 VVSREPDK--VIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 7.289e-23 Identity = 54/103 (52.43%), Postives = 67/103 (65.05%), Query Frame = -2 Query: 170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478 +I P+ + T ++LPSG + S RA +G VAGGGR EKP LKAG YH+ R K +P VRG AM+P HPHGGG+HQ G + V + APPGQKVG I Sbjct: 128 VIGQKPEENKTIIRLPSGRTVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 228
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PYRAB (50S ribosomal protein L2P OS=Pyrococcus abyssi GN=rpl2p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 7.289e-23 Identity = 53/97 (54.64%), Postives = 62/97 (63.92%), Query Frame = -2 Query: 170 DNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 460 + D V+LPSG K CRA IG VAGGGR EKPL+KAG AY+K++ + WP RGV MN V HP GG H H G +T R APPG+KVG I Sbjct: 135 EKDKVIVQLPSGELKAFNPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNRFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.243e-22 Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = -2 Query: 176 NDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 457 + TT V+LPSG + S RA IG VAGGGR EKP +KAGN YH+ R K +PKVRG AM+ HPHGGG+HQ G + V+++APPGQKVG Sbjct: 137 DSTTLVQLPSGRMIEVDSRARATIGIVAGGGRIEKPFVKAGNKYHRARTKAWKYPKVRGKAMSAYAHPHGGGSHQQGG--TPVKKNAPPGQKVG 228
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PYRCJ (50S ribosomal protein L2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 2.770e-22 Identity = 54/103 (52.43%), Postives = 67/103 (65.05%), Query Frame = -2 Query: 170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478 +I P+ + T V+LPSG + + RA IG VAGGGR EKP +KAG YH+ R K +P VRG AM+P HPHGGG+HQ G + V + APPGQKVG I Sbjct: 126 VIGQRPEENKTIVRLPSGRVIEVDARGRATIGIVAGGGRVEKPFVKAGKKYHRARAKSWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 226
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PYRAR (50S ribosomal protein L2P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl2p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 3.617e-22 Identity = 52/103 (50.49%), Postives = 67/103 (65.05%), Query Frame = -2 Query: 170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478 ++ P+ + T ++LPSG + + RA +G VAGGGR EKP LKAG YH+ R K +P VRG AM+P HPHGGG+HQ G + V + APPGQKVG I Sbjct: 128 VVGQKPEENKTIIRLPSGRVIEVDARGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 228 The following BLAST results are available for this feature:
BLAST of CF835142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835142 ID=CF835142; Name=CF835142; organism=Citrus sinensis; type=EST; length=479bpback to top |