CF835142

Overview
NameCF835142
Unique NameCF835142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length479
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:476..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.617e-22
Identity = 52/103 (50.49%), Postives = 64/103 (62.14%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            + SH  +  T  VKLPSG    +    RAMIG +AGGG +E+P + AG  +  F+ K   +P VRGVA     HPHGGG HQH+G +STV RD PPG KVG I
Sbjct:  130 VFSHGDEGVT--VKLPSGKFTTLNPKNRAMIGTLAGGGASERPFMSAGGKWRNFKAKGKKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRDTPPGAKVGSI 230          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.170e-22
Identity = 52/101 (51.49%), Postives = 63/101 (62.38%), Query Frame = -2
Query:  176 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 478
            ++SH        +KLPSG+ +     CRA +G VA  G  + P+LKAG   H  R K      VRGVAMN V HPHGGGNHQH+G  STV R+APPG+KVG
Sbjct:  124 VVSHG---SRVTLKLPSGSMRDFDPRCRATVGVVAASGIIDAPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVG 221          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.170e-22
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            ++   P+ + T V+LPSG    + +  RA +G VAGGGR EKP++KAG  Y++ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG I
Sbjct:  127 VVGQKPEENKTIVRLPSGRTMEVDARGRATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLVRGKAMSPYAHPHGGGSHQKGG--TPVSKTAPPGQKVGFI 227          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.170e-22
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = -2
Query:  170 TRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 448
            T V +PSG  K +   CRA++G VAG GR ++P LKAG  YHK + +   +P+V  VAMNP +HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:  137 TAVSMPSGNIKWLNPKCRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.795e-21
Identity = 52/101 (51.49%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  176 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 478
            ++SH        +KLPSG  +     CRA +G VA  G  + P+LKAG   H  R K      VRGVAMN V HPHGGGNHQH+G  STV R+APPG+KVG
Sbjct:  124 VVSHGQH---VTLKLPSGRMRDFDPRCRATLGVVAASGIKDPPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVG 221          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.062e-21
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = -2
Query:  170 VKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 442
            +KLPSG    +    RAM+G +AGGG +E+P + AG  + +FR K   +P VRGVA     HPHGGG HQH+G +STV R+APPG KVG I
Sbjct:  139 LKLPSGRFSTLNPKNRAMVGTLAGGGVSERPFMSAGGKWRRFRSKGRKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRNAPPGAKVGSI 229          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PYRIL (50S ribosomal protein L2P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.999e-21
Identity = 50/101 (49.50%), Postives = 65/101 (64.36%), Query Frame = -2
Query:  176 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 478
            ++   P+ + T ++LPSG    + S  RA +G VAGGGR EKP LKAG  YH+ + K   +P VRG AM+P  HPHGGG+H   G  + V + APPGQKVG
Sbjct:  128 VVGQKPEENKTIIRLPSGKVVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRAKAKAWKYPTVRGKAMSPYAHPHGGGSHPKGG--TPVPKTAPPGQKVG 226          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.999e-21
Identity = 45/95 (47.37%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  176 DNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 460
            D+    +++PSG  K     C A +G VAGGGR EKP +KAG  +   R     WP+V+GV MN ++HP GGG HQH G   TV R   PG+KVG
Sbjct:  133 DDGRVGIRMPSGKNKWFNGACMATVGIVAGGGRGEKPFVKAGKKHFHVRSSSERWPRVKGVCMNVIDHPFGGGGHQHCGRPKTVARGTSPGRKVG 227          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.592e-20
Identity = 51/101 (50.50%), Postives = 60/101 (59.41%), Query Frame = -2
Query:  176 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 478
            +ISH        +KLPSG  K     CRA +G +AG G  + P+LKAG      + K      VRGVAMN V HPHGGGNHQH+G  STV R  PPG+KVG
Sbjct:  124 VISHGA---YVSLKLPSGVNKEFHPRCRATVGFIAGSGARDIPILKAGTHIKYLQSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRGTPPGRKVG 221          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.139e-18
Identity = 45/95 (47.37%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  170 DTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 454
            D   V+LPSG  K + +  RA+IG +AGGGR EKP +KAGN Y+    +   WP V GV  N  +HP GG  H +     TV + APPG+KVG I
Sbjct:  135 DKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDHPFGGKRHSNHSKPFTVSKWAPPGRKVGYI 229          
The following BLAST results are available for this feature:
BLAST of CF835142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RL2_NITMS3.617e-2250.4950S ribosomal protein L2P OS=Nitrosopumilus mariti... [more]
RL2_THEVO6.170e-2251.4950S ribosomal protein L2P OS=Thermoplasma volcaniu... [more]
RL2_THENV6.170e-2249.5150S ribosomal protein L2P OS=Thermoproteus neutrop... [more]
RL2_METAC6.170e-2252.6950S ribosomal protein L2P OS=Methanosarcina acetiv... [more]
RL2_THEAC1.795e-2151.4950S ribosomal protein L2P OS=Thermoplasma acidophi... [more]
RL2_CENSY3.062e-2152.7550S ribosomal protein L2P OS=Cenarchaeum symbiosum... [more]
RL2_PYRIL3.999e-2149.5050S ribosomal protein L2P OS=Pyrobaculum islandicu... [more]
RL2_METMJ3.999e-2147.3750S ribosomal protein L2P OS=Methanoculleus marisn... [more]
RL2_PICTO2.592e-2050.5050S ribosomal protein L2P OS=Picrophilus torridus ... [more]
RL2_NANEQ4.139e-1847.3750S ribosomal protein L2P OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835142 ID=CF835142; Name=CF835142; organism=Citrus sinensis; type=EST; length=479bp
AAGATTNAAATTTGAANAAATTTTTCTAAGGTAATGATGCAGCAGGAAAA
GTAAAATGACAGATCGCGATAGAGAGACGATTTGTTGTAACACAAAGGAT
TTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGTCCTCTGAGCC
GACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCCAGGAGGAGCA
TCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGTTACCTCCTCC
ATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACCTTAGGCCAGC
AGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGCTTTGAGAAGG
GGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCATCGCTCTGCA
GCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTGACCCTGGTGG
TGTCATTATCGGGGTTATGACTGATGATA
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