CF835142

Overview
NameCF835142
Unique NameCF835142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length479
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:476..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_THEPD (50S ribosomal protein L2P OS=Thermofilum pendens (strain Hrk 5) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.019e-16
Identity = 48/103 (46.60%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  170 IISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 478
            +++H+  N  T ++LPS   K + S  RA IG VA GGR EKP+LKAG  +H  R K   +P VRG AM+   HP GGG+H      +   R+APPG+KVG I
Sbjct:  133 VLAHS--NGKTLIQLPSKKVKEVSSEARATIGMVAAGGRIEKPMLKAGKMWHWSRAKSFKYPTVRGKAMSAYAHPAGGGHHPK--GLTPAPRNAPPGRKVGHI 231          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.900e-11
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = -2
Query:  242 DNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 460
            +  +  +KLPSG  ++IP  C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:  166 EGKSATLKLPSGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_TROWT (50S ribosomal protein L2 OS=Tropheryma whipplei (strain Twist) GN=rplB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.400e-11
Identity = 38/83 (45.78%), Postives = 46/83 (55.42%), Query Frame = -2
Query:  224 DNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 460
            D D   +KLPSG  +++   CRA IG+V  G R    L KAG         R+ W    P VRGVAMNPV+HPHGGG  +  G
Sbjct:  169 DGDFAILKLPSGEIRMVSLSCRATIGEVGNGQRLNVSLGKAG---------RSRWCGVRPSVRGVAMNPVDHPHGGGEGKTSG 242          
BLAST of CF835142 vs. ExPASy Swiss-Prot
Match: RL2_TROW8 (50S ribosomal protein L2 OS=Tropheryma whipplei (strain TW08/27) GN=rplB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.400e-11
Identity = 38/83 (45.78%), Postives = 46/83 (55.42%), Query Frame = -2
Query:  224 DNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIG 460
            D D   +KLPSG  +++   CRA IG+V  G R    L KAG         R+ W    P VRGVAMNPV+HPHGGG  +  G
Sbjct:  169 DGDFAILKLPSGEIRMVSLSCRATIGEVGNGQRLNVSLGKAG---------RSRWCGVRPSVRGVAMNPVDHPHGGGEGKTSG 242          
The following BLAST results are available for this feature:
BLAST of CF835142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RL2_THEPD1.019e-1646.6050S ribosomal protein L2P OS=Thermofilum pendens (... [more]
RK2_MORIN4.900e-1144.1650S ribosomal protein L2, chloroplastic OS=Morus i... [more]
RL2_TROWT6.400e-1145.7850S ribosomal protein L2 OS=Tropheryma whipplei (s... [more]
RL2_TROW86.400e-1145.7850S ribosomal protein L2 OS=Tropheryma whipplei (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835142 ID=CF835142; Name=CF835142; organism=Citrus sinensis; type=EST; length=479bp
AAGATTNAAATTTGAANAAATTTTTCTAAGGTAATGATGCAGCAGGAAAA
GTAAAATGACAGATCGCGATAGAGAGACGATTTGTTGTAACACAAAGGAT
TTAAGCCTTGTCGGCCTTGGCTGCAGTGGCAGCAGCTTGTCCTCTGAGCC
GACCAGTCCTCCTGGCTGCAATAAGACCAACCTTCTGGCCAGGAGGAGCA
TCACGCCTAACAGTGCTAGCATGACCAATGTGCTGGTGGTTACCTCCTCC
ATGAGGATGCTCCACTGGGTTCATGGCCACACCACGCACCTTAGGCCAGC
AGTTTCGCTTCACTCTGAATTTGTGGTATGCATTACCAGCTTTGAGAAGG
GGCTTCTCAGTCCTCCCTCCGCCGGCAACCTGCCCAATCATCGCTCTGCA
GCCACTTGGAATAATCTTTTTGGCACCAGATGGAAGCTTGACCCTGGTGG
TGTCATTATCGGGGTTATGACTGATGATA
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