CF835143

Overview
NameCF835143
Unique NameCF835143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_ERWCT (50S ribosomal protein L2 OS=Erwinia carotovora subsp. atroseptica GN=rplB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.963e-21
Identity = 70/212 (33.02%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   10 PLIRAQRKGAG---SVFLSHTHHRKGPAQ-FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            PL+    K  G   +  ++  H   G  Q +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG A       R   P VRG AMNPV+HP
Sbjct:   32 PLVEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGIRPTVRGTAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_CYCTA (50S ribosomal protein L2, chloroplastic OS=Cycas taitungensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.963e-21
Identity = 67/203 (33.00%), Postives = 104/203 (51.23%), Query Frame = 1
Query:   31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            KG  S  +    HR G  +  +R +DF     Y+ G +  I +DP R A +  V +        +K+  +   G+  G  +  G +A + +GN LP+  +P G  + ++E  +G  G LARA+G  A +I+   +  +T ++LPSG  ++I   C A IGQV         L KAG+   ++  KR   P+VRGV MNPV+HP
Sbjct:   42 KGRNSRGIITARHRGGGHKRLYRQIDFQRNEKYIFGEIVTIEYDPNRSAYICLVHYGDG-----EKKYILHPRGVIIGDTITSGPRAPISIGNALPLTDVPLGTAIHSIEITLGKGGQLARAAGAVAELIA--KEGRSTTLRLPSGEIRLISENCSATIGQVGNVNANNGTLGKAGS--KRWLGKR---PRVRGVVMNPVDHP 232          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_PELCD (50S ribosomal protein L2 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.564e-21
Identity = 71/209 (33.97%), Postives = 104/209 (49.76%), Query Frame = 1
Query:   28 RKGAGSVFLSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            R  AG +   HT   H RK    +R +DF      +   +A I +DP R A +A   +        +K   +A  G+  G  V   ++A +  GN L +RSIP G  V N+E  +G  G LAR++G YA+I +   +    +++LPSG  +++   C A +GQV   G  +   +K G A       RN W    P+ RGVAMNPV+HP
Sbjct:   43 RNNAGRITKRHTGGGHKRK----YRVIDFRREKKEIPAKIASIEYDPNRSARIALACYADG-----EKRYILAPLGLKVGDVVIASEQADIKPGNALSIRSIPLGTWVHNIELKIGKGGQLARSAGTYAMIAA--KEGKYAQLRLPSGEVRLVLQDCCATVGQV---GNVQHENVKIGKA------GRNRWLGKRPQSRGVAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_CLOCE (50S ribosomal protein L2 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.564e-21
Identity = 64/191 (33.51%), Postives = 102/191 (53.40%), Query Frame = 1
Query:   64 HHRKGPAQ-FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            HH  G  Q +R +DF      +K  VA I +DP R A +A + +        +K   +A  G+  G FV  G+ + +  GN LP+ +IP G+++ N+E   G  G + RA+G+ A +++   + +  +++LPSG  +++   CRA +GQ+   G  E   +K G A  K  +     P VRGV MNPV+HP
Sbjct:   53 HHGGGNRQKYRVIDFKRDKDGIKAKVATIEYDPNRTANIALLNYADG-----EKRYILAPVGLKVGDFVESGESSDIRTGNALPLANIPVGSMIHNIELKPGKGGQMVRAAGNAAQLMA--KEGEYAQIRLPSGEVRMVRINCRATLGQI---GNIEHENVKIGKAGRKRWM--GVRPTVRGVVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_CHLT3 (50S ribosomal protein L2 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.564e-21
Identity = 62/186 (33.33%), Postives = 98/186 (52.69%), Query Frame = 1
Query:   88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +R +DF      +   VA I +DP R A +A +++        +K   +A  G+  G  + CG +A + VGN LP+++IP G  V N+E   G  G +AR++G YAV+++   + D   +K+PSG  + +   C+A +G +   G  E   L  G A       R+ W    P+ RG+AMNPV+HP
Sbjct:   62 YRIIDFKRNKDGIPAKVATIEYDPNRTARIALLSYADG-----EKRYILAPNGIKVGDLIECGPEADIKVGNALPLKNIPVGIEVHNIEMRPGKGGQMARSAGSYAVLVA--KEGDYATLKMPSGELRKVRVECKATVGVI---GNLEHENLSLGKA------GRSRWLGIRPQTRGMAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_PINKO (50S ribosomal protein L2, chloroplastic OS=Pinus koraiensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.564e-21
Identity = 68/203 (33.50%), Postives = 105/203 (51.72%), Query Frame = 1
Query:   31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            KG  +  +    HR G  +  +R +DF     ++ G +  I +DP R A + +V +++       K   +   G+  G  +  G KA + +GNVLP+ ++P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A IGQV       +   KAG    ++  KR+   +VRGVAMNPV+HP
Sbjct:   42 KGRNARGIITARHRGGGHKRLYRQIDFRRDKEHISGEIVTIEYDPNRSAYICKVHYKNG-----DKMYILHPRGVMIGDTILSGPKAPISIGNVLPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLR--LPSGEVRLISENCSATIGQVGNITANNRSFGKAG--AKRWLGKRS---EVRGVAMNPVDHP 232          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_HUPLU (50S ribosomal protein L2, chloroplastic OS=Huperzia lucidula GN=rpl2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.348e-21
Identity = 69/204 (33.82%), Postives = 105/204 (51.47%), Query Frame = 1
Query:   28 RKGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            RKG  +  +  + HR G  +  +R +DF      + G +  + +DP R A +  V +        +K+  +   G+  G  +  G  AT+++GN LP+ ++P G  + NVE   G  G LARA+G  A +I+      T+R  LPSG  ++I   C A +GQV       + L KAG+   ++  KR   PKVRGV MNPV+HP
Sbjct:   41 RKGRNNRGIITSRHRGGGHKRLYRQIDFRRSKRGISGRIVTVEYDPNRNAYICLVHYEDG-----EKKYILHPGGIKIGDTIISGPMATILIGNALPLTNMPLGTTIHNVEITPGRGGQLARAAGTAAKLIAKEGRLATSR--LPSGEVRLISQNCLATVGQVGNVDDNNRTLGKAGS--KRWLGKR---PKVRGVVMNPVDHP 232          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_SHEAM (50S ribosomal protein L2 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.373e-21
Identity = 63/182 (34.62%), Postives = 95/182 (52.20%), Query Frame = 1
Query:   88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            +R +DF      + G +  + +DP R A +A V +        ++   +AA+GM  G  V  G  A + VGN LP+R+IP G+VV  VE   G    +AR++G Y  +++   D +   ++L SG  + +P  CRA +G+V       + L KAG      +  R   P VRGVAMNPV+HP
Sbjct:   62 YRLIDFKRNKDGIPGKIERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKVVSGIDADIKVGNALPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGEYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.373e-21
Identity = 68/203 (33.50%), Postives = 102/203 (50.25%), Query Frame = 1
Query:   31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            KG  +  +    HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+ +IP G  + N+E  +G  G LARA+G  A +IS   +  +  VKLPSG  ++I   C A +GQV   G   K L +AG+   ++  KR   P VRGVAMNPV+HP
Sbjct:   39 KGRNARGIITAGHRGGGHKRLYRQIDFRRNENNIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGARIGDTIVSGTEVPIKMGNALPLTNIPLGTAIHNIEITLGKGGQLARAAGAVAKLIS--KEGKSAAVKLPSGEVRLISQNCSATVGQVGNVGVNRKSLGRAGS--KRWLGKR---PVVRGVAMNPVDHP 229          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_LEPTE (50S ribosomal protein L2, chloroplastic OS=Leptosira terrestris GN=rpl2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.373e-21
Identity = 68/203 (33.50%), Postives = 104/203 (51.23%), Query Frame = 1
Query:   31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            KG  +  +  + HR G  +  +R++DF      + G VA I +DP R A +A+V ++       +K   +   G+  GQ +     A + +GN LP+  IP G  + N+E   G  G LARA+G  A +++   + +   ++LPSG  +++   C A IGQV   G  E+  L  G A     + R   PKVRGV MNPV+HP
Sbjct:   41 KGRNNRGIITSRHRGGGHKRLYRNIDFKRNKLGILGQVATIEYDPNRNARIAKVHYQDG-----EKRYILYPRGLQLGQTILSNFNAPITIGNSLPLHQIPLGTEIHNIELKPGSGGQLARAAGSVAQLVA--KEGNFVTLRLPSGEIRLVSKSCWATIGQV---GNVEQMNLTVGKAGKSRWLGRR--PKVRGVVMNPVDHP 231          
The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_ERWCT1.963e-2133.0250S ribosomal protein L2 OS=Erwinia carotovora sub... [more]
RK2_CYCTA1.963e-2133.0050S ribosomal protein L2, chloroplastic OS=Cycas t... [more]
RL2_PELCD2.564e-2133.9750S ribosomal protein L2 OS=Pelobacter carbinolicu... [more]
RL2_CLOCE2.564e-2133.5150S ribosomal protein L2 OS=Clostridium cellulolyt... [more]
RL2_CHLT32.564e-2133.3350S ribosomal protein L2 OS=Chloroherpeton thalass... [more]
RK2_PINKO2.564e-2133.5050S ribosomal protein L2, chloroplastic OS=Pinus k... [more]
RK2_HUPLU3.348e-2133.8250S ribosomal protein L2, chloroplastic OS=Huperzi... [more]
RL2_SHEAM4.373e-2134.6250S ribosomal protein L2 OS=Shewanella amazonensis... [more]
RK2_PELHO4.373e-2133.5050S ribosomal protein L2, chloroplastic OS=Pelargo... [more]
RK2_LEPTE4.373e-2133.5050S ribosomal protein L2, chloroplastic OS=Leptosi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bp
GAAATGGGTCCTTTGATTCGCGCACAGCGAAAGGGTGCAGGTTCGGTCTT
CCTGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCG
ACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATT
CACGATCCGGGTCGGGGTGCCCCGCTGGCCCGAGTCACCTTTCGTCACCC
TTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGT
ACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGT
AATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGT
TGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGTGATT
ATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAG
CTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCGATGAT
TGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTG
GTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTG
CGTGGTGTGGCCATGAACCCAGTGGAGCATCCT
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