CF835143

Overview
NameCF835143
Unique NameCF835143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_SODGM (50S ribosomal protein L2 OS=Sodalis glossinidius (strain morsitans) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.711e-21
Identity = 63/182 (34.62%), Postives = 94/182 (51.65%), Query Frame = 1
Query:   88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G+ +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + I S CRA +G+V       + L KAG +       R   P VRG AMNPV+HP
Sbjct:   62 YRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGEQIQSGVDAAIKAGNALPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIQSECRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_OCEIH (50S ribosomal protein L2 OS=Oceanobacillus iheyensis GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.711e-21
Identity = 74/211 (35.07%), Postives = 107/211 (50.71%), Query Frame = 1
Query:   19 RAQRKGAGSVFLSHTH--HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            R  R   G + + H    H++   Q+R +DF      + G VA I +DP R A +A V +        +K   IA +G+  GQ +  G+ A + +GN LP+ SIP G V+ N+E   G  G +AR++G  A I+    +   T V+L SG  ++I + CRA IGQV   G  E  L++ G A       R+ W    P VRG  MNP +HP
Sbjct:   40 RGGRNNQGKLTVRHQGGGHKR---QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALVHYADG-----EKRYIIAPKGIKVGQEIESGENADIKLGNALPLGSIPVGTVIHNIELKPGRGGQIARSAGAEAQILGR--EEKYTLVRLSSGEVRLILTTCRATIGQV---GNIEHELVRVGKA------GRSRWKGIRPTVRGSVMNPNDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_MYCS5 (50S ribosomal protein L2 OS=Mycoplasma synoviae (strain 53) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.711e-21
Identity = 69/204 (33.82%), Postives = 99/204 (48.53%), Query Frame = 1
Query:   22 AQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            A R   G + + H H  +    +R +DF      +  VV  I +DP R A +  + +        +K   IA +G+  GQ V  G+ A ++VGN LP+ +IPEG  + N+E   G    LAR++G  A I+  + +     VKL SG  + I + CRA +G V   G  E  L+  G A       R   P VRG  MNPV+HP
Sbjct:   42 AGRNNQGKITVRH-HGGRVKRFYRLVDFKRNKDNIPAVVKTIEYDPNRSANICLLAYADG-----EKRYIIAPKGIKVGQKVVSGEGADIIVGNSLPLSNIPEGTFIHNIEMQPGGGAKLARSAGTSAQILGKDDNGKYVVVKLKSGETRRILARCRATVGMV---GNEEYSLVNVGKA--GINRHRGIRPTVRGSVMNPVDHP 234          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_PINTH (50S ribosomal protein L2, chloroplastic OS=Pinus thunbergii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.711e-21
Identity = 67/203 (33.00%), Postives = 103/203 (50.74%), Query Frame = 1
Query:   31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            KG     +    HR G  +  +R +DF     ++ G +  I +DP R A + +V +++       K   +   G+  G  +  G KA + +GN LP+ ++P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A IGQV       +   KAG    ++  KR+   +VRGVAMNPV+HP
Sbjct:   42 KGRNGRGIITARHRGGGHKRLYRQIDFRRNKEHISGEIVTIEYDPNRSAYICKVHYKNG-----DKMYILHPRGVMIGDTILSGPKAPISIGNALPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLR--LPSGEVRLISENCSATIGQVGNITANNRSFGKAG--AKRWLGKRS---EVRGVAMNPVDHP 232          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.711e-21
Identity = 65/207 (31.40%), Postives = 100/207 (48.31%), Query Frame = 1
Query:   31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            KG  +  +    HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++IP  C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HP
Sbjct:   39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGGG-----EKRYILHPRGALIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHP 229          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_CHAVU (50S ribosomal protein L2, chloroplastic OS=Chara vulgaris GN=rpl2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.711e-21
Identity = 65/207 (31.40%), Postives = 105/207 (50.72%), Query Frame = 1
Query:   19 RAQRKGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            +  +KG  +  +  + HR G  +  +R +DF  +   + G+V  I +DP R + +  V +        +K   +   G+  G  +     A++ VGN LP+  IP G  + N+E   G  G L RA+G  A +++   +   T ++LPSG  ++I   C A IGQV       + + KAG+   +++ KR   PKVRG AMNPV+HP
Sbjct:   37 KMSKKGRNNQGIITSRHRGGGHKRLYRKIDFRRKKIGIYGIVKTIEYDPNRNSHICLVNYEDG-----EKRYILYPRGIKIGDTILSSMDASIFVGNTLPLTQIPLGTAIHNIELQPGKGGQLVRAAGTVAQVVA--KEGKWTSIRLPSGEVRLIYQKCLATIGQVGNPEFNNQSIGKAGS--KRWQGKR---PKVRGTAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_TREDE (50S ribosomal protein L2 OS=Treponema denticola GN=rplB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21
Identity = 65/188 (34.57%), Postives = 101/188 (53.72%), Query Frame = 1
Query:   85 QFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            ++R +DF +RN Y + G V  I +DP R A +A + +        +K   IA +G+  GQ +  G+ ATL V N LP+ +IP G  V N+E  +G  G +AR++G  A++ +   + +   ++LPSG  +++   C A IG+V         L KAG         R+ W    P VRG+AMNP++HP
Sbjct:   61 KYRQIDF-KRNKYGIPGTVRTIEYDPNRSANIALIFYADG-----EKRYIIAPKGLKIGQKIMSGEMATLDVANALPLEAIPVGFTVHNIELTIGRGGQMARSAGAGALVAA--KEGEYVTIRLPSGETRLVNKKCYATIGEVGNEDHMNTSLGKAG---------RSRWLGIRPTVRGMAMNPIDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_SALTY (50S ribosomal protein L2 OS=Salmonella typhimurium GN=rplB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21
Identity = 69/212 (32.55%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   10 PLIRAQRKGAG---SVFLSHTHHRKGPAQ-FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            PL+    K  G   +  ++  H   G  Q +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HP
Sbjct:   32 PLVEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_SALTI (50S ribosomal protein L2 OS=Salmonella typhi GN=rplB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21
Identity = 69/212 (32.55%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   10 PLIRAQRKGAG---SVFLSHTHHRKGPAQ-FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            PL+    K  G   +  ++  H   G  Q +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HP
Sbjct:   32 PLVEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_SALSV (50S ribosomal protein L2 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21
Identity = 69/212 (32.55%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   10 PLIRAQRKGAG---SVFLSHTHHRKGPAQ-FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            PL+    K  G   +  ++  H   G  Q +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HP
Sbjct:   32 PLVEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHP 231          
The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SODGM5.711e-2134.6250S ribosomal protein L2 OS=Sodalis glossinidius (... [more]
RL2_OCEIH5.711e-2135.0750S ribosomal protein L2 OS=Oceanobacillus iheyens... [more]
RL2_MYCS55.711e-2133.8250S ribosomal protein L2 OS=Mycoplasma synoviae (s... [more]
RK2_PINTH5.711e-2133.0050S ribosomal protein L2, chloroplastic OS=Pinus t... [more]
RK2_MORIN5.711e-2131.4050S ribosomal protein L2, chloroplastic OS=Morus i... [more]
RK2_CHAVU5.711e-2131.4050S ribosomal protein L2, chloroplastic OS=Chara v... [more]
RL2_TREDE7.459e-2134.5750S ribosomal protein L2 OS=Treponema denticola GN... [more]
RL2_SALTY7.459e-2132.5550S ribosomal protein L2 OS=Salmonella typhimurium... [more]
RL2_SALTI7.459e-2132.5550S ribosomal protein L2 OS=Salmonella typhi GN=rp... [more]
RL2_SALSV7.459e-2132.5550S ribosomal protein L2 OS=Salmonella schwarzengr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bp
GAAATGGGTCCTTTGATTCGCGCACAGCGAAAGGGTGCAGGTTCGGTCTT
CCTGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCG
ACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATT
CACGATCCGGGTCGGGGTGCCCCGCTGGCCCGAGTCACCTTTCGTCACCC
TTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGT
ACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGT
AATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGT
TGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGTGATT
ATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAG
CTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCGATGAT
TGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTG
GTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTG
CGTGGTGTGGCCATGAACCCAGTGGAGCATCCT
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