CF835143

Overview
NameCF835143
Unique NameCF835143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_STAAM (50S ribosomal protein L2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplB PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 71/209 (33.97%), Postives = 103/209 (49.28%), Query Frame = 1 
Query:   19 RAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +A R   G + + H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HP
Sbjct:   40 KAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHP 231
[Close]
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_STAAE (50S ribosomal protein L2 OS=Staphylococcus aureus (strain Newman) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 71/209 (33.97%), Postives = 103/209 (49.28%), Query Frame = 1 
Query:   19 RAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +A R   G + + H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HP
Sbjct:   40 KAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHP 231
[Close]
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_STAAC (50S ribosomal protein L2 OS=Staphylococcus aureus (strain COL) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 71/209 (33.97%), Postives = 103/209 (49.28%), Query Frame = 1 
Query:   19 RAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +A R   G + + H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HP
Sbjct:   40 KAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHP 231
[Close]
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_STAAB (50S ribosomal protein L2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 71/209 (33.97%), Postives = 103/209 (49.28%), Query Frame = 1 
Query:   19 RAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +A R   G + + H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HP
Sbjct:   40 KAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHP 231
[Close]
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_STAA9 (50S ribosomal protein L2 OS=Staphylococcus aureus (strain JH9) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 71/209 (33.97%), Postives = 103/209 (49.28%), Query Frame = 1 
Query:   19 RAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +A R   G + + H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HP
Sbjct:   40 KAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHP 231
[Close]
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_STAA8 (50S ribosomal protein L2 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 71/209 (33.97%), Postives = 103/209 (49.28%), Query Frame = 1 
Query:   19 RAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +A R   G + + H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HP
Sbjct:   40 KAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHP 231
[Close]
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_STAA3 (50S ribosomal protein L2 OS=Staphylococcus aureus (strain USA300) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 71/209 (33.97%), Postives = 103/209 (49.28%), Query Frame = 1 
Query:   19 RAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +A R   G + + H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HP
Sbjct:   40 KAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHP 231
[Close]
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_STAA2 (50S ribosomal protein L2 OS=Staphylococcus aureus (strain JH1) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 71/209 (33.97%), Postives = 103/209 (49.28%), Query Frame = 1 
Query:   19 RAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +A R   G + + H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HP
Sbjct:   40 KAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHP 231
[Close]
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_STAA1 (50S ribosomal protein L2 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 71/209 (33.97%), Postives = 103/209 (49.28%), Query Frame = 1 
Query:   19 RAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +A R   G + + H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HP
Sbjct:   40 KAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHP 231
[Close]
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BUCBP (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.272e-20
Identity = 60/182 (32.97%), Postives = 94/182 (51.65%), Query Frame = 1 
Query:   88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            +R +DF      +  +V  + +DP R + +A + +    R        +A++G+  G  +  G  A + +GN LP+++IP G V+ NVE   G  G +AR++G Y  +IS   +N    ++L SG  + + S CRA IG+V       + L KAG +       R   P VRG AMNPV+HP
Sbjct:   62 YRIIDFKRNKDNIPAIVERLEYDPNRSSNIALILYSDGDR-----RYILASKGLMVGSKIVSGFNAEIKIGNALPMKNIPIGTVIHNVEIKPGKGGQIARSAGTYVQLISR--ENSYVTIRLRSGETRKLESKCRATIGEVGNSESMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHP 231
The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_STAAM1.272e-2033.9750S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAAE1.272e-2033.9750S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAAC1.272e-2033.9750S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAAB1.272e-2033.9750S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAA91.272e-2033.9750S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAA81.272e-2033.9750S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAA31.272e-2033.9750S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAA21.272e-2033.9750S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAA11.272e-2033.9750S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_BUCBP1.272e-2032.9750S ribosomal protein L2 OS=Buchnera aphidicola su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bp
GAAATGGGTCCTTTGATTCGCGCACAGCGAAAGGGTGCAGGTTCGGTCTT
CCTGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCG
ACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATT
CACGATCCGGGTCGGGGTGCCCCGCTGGCCCGAGTCACCTTTCGTCACCC
TTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGT
ACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGT
AATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGT
TGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGTGATT
ATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAG
CTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCGATGAT
TGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTG
GTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTG
CGTGGTGTGGCCATGAACCCAGTGGAGCATCCT
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