CF835143
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_DESAD (50S ribosomal protein L2 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplB PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19 Identity = 61/186 (32.80%), Postives = 93/186 (50.00%), Query Frame = 1 Query: 88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 +R +DF + VA I +DP R A +A + + +K + G+ G + G+KA + GN L +++IP G +V N+E + G G RA+G YA +I+ + +++PSG + + + C A +GQV L KAG RN W PKVRGVAMNP++HP Sbjct: 62 YRIIDFKRNKVEVPATVASIEYDPNRSARIALLHYADG-----EKRYILCPVGLNKGDKILAGEKADIKPGNALLLKNIPVGTIVHNIELYPGKGGQFCRAAGTYAQLIA--KEGKYALLRMPSGEVRKVLATCCATVGQVGNIHHENITLGKAG---------RNRWLGRRPKVRGVAMNPIDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_CHLTE (50S ribosomal protein L2 OS=Chlorobium tepidum GN=rplB PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19 Identity = 59/186 (31.72%), Postives = 96/186 (51.61%), Query Frame = 1 Query: 88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 +R +DF + VA I +DP R A +A + + +K +A + + G + G+K + VGN +P+++IP G+ V N+E +G G +AR++G YAV+ + + + +K+PSG + + CRA IG + L KAG R+ W P+ RG+AMNPV+HP Sbjct: 62 YRIIDFKRNKDNVPAKVAAIEYDPNRSARIALLHYVDG-----EKRYILAPKNLKVGDRIESGEKVDIKVGNTMPLKNIPIGSDVHNIELKIGKGGQIARSAGAYAVLAAR--EGNYATLKMPSGEIRKVRIECRATIGVIGNAEHENISLGKAG---------RSRWLGIRPQTRGMAMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BACV8 (50S ribosomal protein L2 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rplB PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19 Identity = 64/195 (32.82%), Postives = 96/195 (49.23%), Query Frame = 1 Query: 49 FLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 ++ H RK +R +DF + VV I +DP R A +A + + +K IA G+ G + G A +GN LP+ +IP G V+ N+E G L R++G++A + S + +KLPSG + I S C+A IG V G ++ L +G A + R P+ RGV MNPV+HP Sbjct: 53 YMGGGHKRK----YRLIDFKRNKDGVPAVVKTIEYDPNRSARIALLFYADG-----EKRYIIAPNGLQVGSTLVSGANAAPEIGNALPLENIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSACKATIGSV---GNSDHGLESSGKAGRTRWMGRR--PRNRGVVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BACSU (50S ribosomal protein L2 OS=Bacillus subtilis GN=rplB PE=1 SV=3) HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19 Identity = 64/187 (34.22%), Postives = 94/187 (50.27%), Query Frame = 1 Query: 85 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 Q+R +DF + G VA + +DP R A +A + + +K +A +G+ G + G +A + VGN LP+ +IP G VV N+E G G L R++G A ++ + V+L SG ++I S CRA IGQV G + L+ G A R+ W P VRG MNP +HP Sbjct: 61 QYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYADG-----EKRYILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRASIGQV---GNEQHELINIGKA------GRSRWKGIRPTVRGSVMNPNDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_ACIBY (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AYE) GN=rplB PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19 Identity = 67/212 (31.60%), Postives = 104/212 (49.06%), Query Frame = 1 Query: 10 PLIRAQRKGAGSVFLSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 PL+ A+++ G H T H G +R +DF + VV I +DP R A +A + + ++ IA +G+ G V G A + GN LP+R++P G+ + NVE +G LAR++G ++ D ++L SG + + CRA+IG+V+ + L KAG A R P VRG+AMNP++HP Sbjct: 32 PLVEAKKRTGGRNNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_ACIBT (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=rplB PE=3 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19 Identity = 67/212 (31.60%), Postives = 104/212 (49.06%), Query Frame = 1 Query: 10 PLIRAQRKGAGSVFLSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 PL+ A+++ G H T H G +R +DF + VV I +DP R A +A + + ++ IA +G+ G V G A + GN LP+R++P G+ + NVE +G LAR++G ++ D ++L SG + + CRA+IG+V+ + L KAG A R P VRG+AMNP++HP Sbjct: 32 PLVEAKKRTGGRNNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_ACIBS (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain SDF) GN=rplB PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19 Identity = 67/212 (31.60%), Postives = 104/212 (49.06%), Query Frame = 1 Query: 10 PLIRAQRKGAGSVFLSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 PL+ A+++ G H T H G +R +DF + VV I +DP R A +A + + ++ IA +G+ G V G A + GN LP+R++P G+ + NVE +G LAR++G ++ D ++L SG + + CRA+IG+V+ + L KAG A R P VRG+AMNP++HP Sbjct: 32 PLVEAKKRTGGRNNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_ACIB5 (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AB0057) GN=rplB PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19 Identity = 67/212 (31.60%), Postives = 104/212 (49.06%), Query Frame = 1 Query: 10 PLIRAQRKGAGSVFLSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 PL+ A+++ G H T H G +R +DF + VV I +DP R A +A + + ++ IA +G+ G V G A + GN LP+R++P G+ + NVE +G LAR++G ++ D ++L SG + + CRA+IG+V+ + L KAG A R P VRG+AMNP++HP Sbjct: 32 PLVEAKKRTGGRNNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_ACIB3 (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AB307-0294) GN=rplB PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19 Identity = 67/212 (31.60%), Postives = 104/212 (49.06%), Query Frame = 1 Query: 10 PLIRAQRKGAGSVFLSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 PL+ A+++ G H T H G +R +DF + VV I +DP R A +A + + ++ IA +G+ G V G A + GN LP+R++P G+ + NVE +G LAR++G ++ D ++L SG + + CRA+IG+V+ + L KAG A R P VRG+AMNP++HP Sbjct: 32 PLVEAKKRTGGRNNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_PROWI (50S ribosomal protein L2, plastid OS=Prototheca wickerhamii GN=rpl2 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19 Identity = 65/193 (33.68%), Postives = 97/193 (50.26%), Query Frame = 1 Query: 61 THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 T HR G + +R +DF +V I +DP R A +A V ++ +K ++ G+ G+ V A + VGN LP+ +IP G V NVE G G L R++G A I++ + + LPSG ++IP C A +G+V + L KAG + ++ +R P VRG AMNPV+HP Sbjct: 51 TRHRGGGHKRLYREIDFIRNKIGTSAIVKSIEYDPNRTARIALVCYKDG-----EKRYILSPTGLKVGEMVIASPNAPITVGNTLPLYNIPLGTSVHNVELQPGAGGQLVRSAGSVAQIVA--KEGQWATLHLPSGEYRLIPQKCWATVGRVGNLDNSNITLGKAGRS--RWLSQR---PHVRGSAMNPVDHP 231 The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bpback to top |