CF835143

Overview
NameCF835143
Unique NameCF835143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_DESAD (50S ribosomal protein L2 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 61/186 (32.80%), Postives = 93/186 (50.00%), Query Frame = 1
Query:   88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +R +DF      +   VA I +DP R A +A + +        +K   +   G+  G  +  G+KA +  GN L +++IP G +V N+E + G  G   RA+G YA +I+   +     +++PSG  + + + C A +GQV         L KAG         RN W    PKVRGVAMNP++HP
Sbjct:   62 YRIIDFKRNKVEVPATVASIEYDPNRSARIALLHYADG-----EKRYILCPVGLNKGDKILAGEKADIKPGNALLLKNIPVGTIVHNIELYPGKGGQFCRAAGTYAQLIA--KEGKYALLRMPSGEVRKVLATCCATVGQVGNIHHENITLGKAG---------RNRWLGRRPKVRGVAMNPIDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_CHLTE (50S ribosomal protein L2 OS=Chlorobium tepidum GN=rplB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 59/186 (31.72%), Postives = 96/186 (51.61%), Query Frame = 1
Query:   88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            +R +DF      +   VA I +DP R A +A + +        +K   +A + +  G  +  G+K  + VGN +P+++IP G+ V N+E  +G  G +AR++G YAV+ +   + +   +K+PSG  + +   CRA IG +         L KAG         R+ W    P+ RG+AMNPV+HP
Sbjct:   62 YRIIDFKRNKDNVPAKVAAIEYDPNRSARIALLHYVDG-----EKRYILAPKNLKVGDRIESGEKVDIKVGNTMPLKNIPIGSDVHNIELKIGKGGQIARSAGAYAVLAAR--EGNYATLKMPSGEIRKVRIECRATIGVIGNAEHENISLGKAG---------RSRWLGIRPQTRGMAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BACV8 (50S ribosomal protein L2 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 64/195 (32.82%), Postives = 96/195 (49.23%), Query Frame = 1
Query:   49 FLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            ++   H RK    +R +DF      +  VV  I +DP R A +A + +        +K   IA  G+  G  +  G  A   +GN LP+ +IP G V+ N+E   G    L R++G++A + S   +     +KLPSG  + I S C+A IG V   G ++  L  +G A     + R   P+ RGV MNPV+HP
Sbjct:   53 YMGGGHKRK----YRLIDFKRNKDGVPAVVKTIEYDPNRSARIALLFYADG-----EKRYIIAPNGLQVGSTLVSGANAAPEIGNALPLENIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSACKATIGSV---GNSDHGLESSGKAGRTRWMGRR--PRNRGVVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BACSU (50S ribosomal protein L2 OS=Bacillus subtilis GN=rplB PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 64/187 (34.22%), Postives = 94/187 (50.27%), Query Frame = 1
Query:   85 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            Q+R +DF      + G VA + +DP R A +A + +        +K   +A +G+  G  +  G +A + VGN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HP
Sbjct:   61 QYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYADG-----EKRYILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRASIGQV---GNEQHELINIGKA------GRSRWKGIRPTVRGSVMNPNDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_ACIBY (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AYE) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 67/212 (31.60%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   10 PLIRAQRKGAGSVFLSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            PL+ A+++  G     H  T H  G     +R +DF      +  VV  I +DP R A +A + +        ++   IA +G+  G  V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HP
Sbjct:   32 PLVEAKKRTGGRNNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_ACIBT (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=rplB PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 67/212 (31.60%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   10 PLIRAQRKGAGSVFLSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            PL+ A+++  G     H  T H  G     +R +DF      +  VV  I +DP R A +A + +        ++   IA +G+  G  V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HP
Sbjct:   32 PLVEAKKRTGGRNNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_ACIBS (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain SDF) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 67/212 (31.60%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   10 PLIRAQRKGAGSVFLSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            PL+ A+++  G     H  T H  G     +R +DF      +  VV  I +DP R A +A + +        ++   IA +G+  G  V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HP
Sbjct:   32 PLVEAKKRTGGRNNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_ACIB5 (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AB0057) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 67/212 (31.60%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   10 PLIRAQRKGAGSVFLSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            PL+ A+++  G     H  T H  G     +R +DF      +  VV  I +DP R A +A + +        ++   IA +G+  G  V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HP
Sbjct:   32 PLVEAKKRTGGRNNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_ACIB3 (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AB307-0294) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 67/212 (31.60%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   10 PLIRAQRKGAGSVFLSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            PL+ A+++  G     H  T H  G     +R +DF      +  VV  I +DP R A +A + +        ++   IA +G+  G  V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HP
Sbjct:   32 PLVEAKKRTGGRNNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_PROWI (50S ribosomal protein L2, plastid OS=Prototheca wickerhamii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 65/193 (33.68%), Postives = 97/193 (50.26%), Query Frame = 1
Query:   61 THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            T HR G  +  +R +DF         +V  I +DP R A +A V ++       +K   ++  G+  G+ V     A + VGN LP+ +IP G  V NVE   G  G L R++G  A I++   +     + LPSG  ++IP  C A +G+V     +   L KAG +  ++  +R   P VRG AMNPV+HP
Sbjct:   51 TRHRGGGHKRLYREIDFIRNKIGTSAIVKSIEYDPNRTARIALVCYKDG-----EKRYILSPTGLKVGEMVIASPNAPITVGNTLPLYNIPLGTSVHNVELQPGAGGQLVRSAGSVAQIVA--KEGQWATLHLPSGEYRLIPQKCWATVGRVGNLDNSNITLGKAGRS--RWLSQR---PHVRGSAMNPVDHP 231          
The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_DESAD6.981e-1932.8050S ribosomal protein L2 OS=Desulfovibrio salexige... [more]
RL2_CHLTE6.981e-1931.7250S ribosomal protein L2 OS=Chlorobium tepidum GN=... [more]
RL2_BACV86.981e-1932.8250S ribosomal protein L2 OS=Bacteroides vulgatus (... [more]
RL2_BACSU6.981e-1934.2250S ribosomal protein L2 OS=Bacillus subtilis GN=r... [more]
RL2_ACIBY6.981e-1931.6050S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIBT6.981e-1931.6050S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIBS6.981e-1931.6050S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIB56.981e-1931.6050S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIB36.981e-1931.6050S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RK2_PROWI6.981e-1933.6850S ribosomal protein L2, plastid OS=Prototheca wi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bp
GAAATGGGTCCTTTGATTCGCGCACAGCGAAAGGGTGCAGGTTCGGTCTT
CCTGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCG
ACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATT
CACGATCCGGGTCGGGGTGCCCCGCTGGCCCGAGTCACCTTTCGTCACCC
TTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGT
ACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGT
AATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGT
TGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGTGATT
ATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAG
CTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCGATGAT
TGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTG
GTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTG
CGTGGTGTGGCCATGAACCCAGTGGAGCATCCT
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