CF835143

Overview
NameCF835143
Unique NameCF835143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_PORYE (50S ribosomal protein L2, chloroplastic OS=Porphyra yezoensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 66/187 (35.29%), Postives = 88/187 (47.06%), Query Frame = 1
Query:   85 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            Q+R +DF      +   VA I +DP R A +A + +        +K   +    +  G  V  G  A + VGN LP+ SIP G  V N+E      G + RA+G YA I++   +     VKLPS   ++I   C A IGQV     +   L KAG         RN W    P VRGV MNPV+HP
Sbjct:   61 QYRLIDFKRNRHNIVAKVASIEYDPNRNARIALLHYLDG-----EKRYILHPRSLSVGSMVLSGPTAPIEVGNALPLSSIPLGTAVHNIELRPSCGGQIVRAAGTYAQIVA--KEGTFVTVKLPSSEVRMIRKECYATIGQVGNIDASNITLGKAG---------RNRWLGKRPTVRGVVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_ILLOL (50S ribosomal protein L2, chloroplastic OS=Illicium oligandrum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 63/207 (30.43%), Postives = 98/207 (47.34%), Query Frame = 1
Query:   31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            KG  +  +  T HR G  +  +R ++F      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +  G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  +++   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HP
Sbjct:   41 KGRNARGVITTGHRGGGHKRLYRKINFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGARIGDTIVSGTEVPISMGNALPLTDMSLGTAIHNIEITLGKGGQLARAAGTVAKLIAKEGKSATLR--LPSGEVRLVSKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_DAUCA (50S ribosomal protein L2, chloroplastic OS=Daucus carota GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 64/203 (31.53%), Postives = 100/203 (49.26%), Query Frame = 1
Query:   31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            KG  +  +    HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E   G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV+HP
Sbjct:   39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHP 229          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_SHEDO (50S ribosomal protein L2 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.118e-19
Identity = 65/204 (31.86%), Postives = 100/204 (49.02%), Query Frame = 1
Query:   28 RKGAGSVFLSHTH--HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            R   G + + H    H++    +R +DF      +   V  I +DP R A +A V +        ++   +AA+GM +G  +  G  + +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +I+   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HP
Sbjct:   43 RNNTGRITVRHVGGGHKQ---HYRLIDFKRNKDGIPAKVERIEYDPNRTAHIALVLYADG-----ERRYILAAKGMKSGDPIQSGVGSEIKTGNSMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_RICPR (50S ribosomal protein L2 OS=Rickettsia prowazekii GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.118e-19
Identity = 62/195 (31.79%), Postives = 99/195 (50.77%), Query Frame = 1
Query:   67 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            HR G  +  +R +DF  +   +  +V  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++SIP G  + NVE  +G  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+HP
Sbjct:   53 HRGGGHKKLYRVIDFKRKKIDISAIVERIEYDPNRTAFIALIKYDDG-----EYSYILAPQKLSIGDRVISSQAADIKIGNCLPLKSIPIGTTLHNVEMKIGKGGQIARSAGTSVELV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_RALEJ (50S ribosomal protein L2 OS=Ralstonia eutropha (strain JMP134) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.118e-19
Identity = 70/208 (33.65%), Postives = 104/208 (50.00%), Query Frame = 1
Query:   16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDF--GERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            I  + KG G     H HH      +R +DF   +++G +   V  + +DP R A +A V F        ++   IA +GM  GQ +  G +A +  GN LP+R+IP G  + NVE   G    +ARA+G  AV+++   +    +V+L SG  + +   CRA IG+V     + + + KAG         R   P VRGV MNPV+HP
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNDKDG-IAAKVERLEYDPNRSANIALVLFADG-----ERRYIIATKGMVAGQALLNGAEAPIKAGNNLPIRNIPVGTTINNVEILPGKGAQVARAAGGSAVLLAR--EGLYAQVRLRSGEVRRVHIECRATIGEVGNEEHSLRVIGKAGATRW-----RGIRPTVRGVVMNPVDHP 232          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_RALEH (50S ribosomal protein L2 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.118e-19
Identity = 70/208 (33.65%), Postives = 104/208 (50.00%), Query Frame = 1
Query:   16 IRAQRKGAGSVFLSHTHHRKGPAQFRSLDF--GERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            I  + KG G     H HH      +R +DF   +++G +   V  + +DP R A +A V F        ++   IA +GM  GQ +  G +A +  GN LP+R+IP G  + NVE   G    +ARA+G  AV+++   +    +V+L SG  + +   CRA IG+V     + + + KAG         R   P VRGV MNPV+HP
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNDKDG-IPARVERLEYDPNRSANIALVLFADG-----ERRYIIATKGMVAGQPLMNGSEAPIKAGNNLPIRNIPVGTTINNVEMLPGKGSQIARAAGGSAVLLAR--EGLYAQVRLRSGEVRRVHIECRATIGEVGNEEHSLRVIGKAGATRW-----RGIRPTVRGVVMNPVDHP 232          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_PSYIN (50S ribosomal protein L2 OS=Psychromonas ingrahamii (strain 37) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.118e-19
Identity = 60/182 (32.97%), Postives = 91/182 (50.00%), Query Frame = 1
Query:   88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            +R +DF      +   V  + +DP R A +A V +        ++   +A +G+  G  +  G+ A++ VGN LP+R+IP G  V  VE        +AR++G Y+ I++   D     ++L SG  + IP+ CRA IG+V       + L KAG         R   P VRGV MNPV+HP
Sbjct:   62 YRIVDFKRNKDGIPAKVERLEYDPNRSANIALVLYSDG-----ERRYILAPKGLVAGDQIISGEDASIKVGNCLPMRNIPVGTTVHAVEMKPAKGAQIARSAGAYSQIVAR--DGAYVTLRLRSGEMRKIPTECRATIGEVGNAEHMLRQLGKAGATRW-----RGVRPTVRGVVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_PSEHT (50S ribosomal protein L2 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.118e-19
Identity = 60/183 (32.79%), Postives = 92/183 (50.27%), Query Frame = 1
Query:   88 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            +R +DF      +   V  + +DP R A +A V +        ++   IA +G+  G  +  G  A +  GN LP+R++P G+ V NVE   G    +AR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG N +   R      P VRGVAMNPV+HP
Sbjct:   62 YRLIDFKRTKDGIPATVERLEYDPNRSANIALVLYADG-----ERRYIIAPKGLKAGDAIQSGVDAPIKPGNALPMRNMPVGSTVHNVELKPGKGAQIARSAGAYVQILAR--DGQYVTLRLRSGEVRKVEADCRATLGEVGNAEHMLRSLGKAGANRWRGIR------PTVRGVAMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_NITEC (50S ribosomal protein L2 OS=Nitrosomonas eutropha (strain C91) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.118e-19
Identity = 63/192 (32.81%), Postives = 97/192 (50.52%), Query Frame = 1
Query:   58 HTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            H HH      +R +DF      +   V  I +DP R A LA + +        +++  IAA+ +  G +V  G  + +  GN LP+R+IP G+V+  +E   G    LAR++G  A +++   + D ++++L SG  + I   CRA IG+V       + + KAG         R   P VRGVAMNPV+HP
Sbjct:   58 HKHH------YRIVDFCRNKDDIPAKVERIEYDPNRSAYLALLCYADG-----ERKYIIAAKDIEVGSYVVNGSGSPVKTGNALPIRNIPVGSVIHCIELKPGKGAQLARSAGSSAQLMAR--EGDYSQIRLRSGEIRKIHINCRATIGEVGNSEHNLQSIGKAGAVRW-----RGIRPTVRGVAMNPVDHP 231          
The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_PORYE6.981e-1935.2950S ribosomal protein L2, chloroplastic OS=Porphyr... [more]
RK2_ILLOL6.981e-1930.4350S ribosomal protein L2, chloroplastic OS=Illiciu... [more]
RK2_DAUCA6.981e-1931.5350S ribosomal protein L2, chloroplastic OS=Daucus ... [more]
RL2_SHEDO9.118e-1931.8650S ribosomal protein L2 OS=Shewanella denitrifica... [more]
RL2_RICPR9.118e-1931.7950S ribosomal protein L2 OS=Rickettsia prowazekii ... [more]
RL2_RALEJ9.118e-1933.6550S ribosomal protein L2 OS=Ralstonia eutropha (st... [more]
RL2_RALEH9.118e-1933.6550S ribosomal protein L2 OS=Ralstonia eutropha (st... [more]
RL2_PSYIN9.118e-1932.9750S ribosomal protein L2 OS=Psychromonas ingrahami... [more]
RL2_PSEHT9.118e-1932.7950S ribosomal protein L2 OS=Pseudoalteromonas halo... [more]
RL2_NITEC9.118e-1932.8150S ribosomal protein L2 OS=Nitrosomonas eutropha ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bp
GAAATGGGTCCTTTGATTCGCGCACAGCGAAAGGGTGCAGGTTCGGTCTT
CCTGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCG
ACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATT
CACGATCCGGGTCGGGGTGCCCCGCTGGCCCGAGTCACCTTTCGTCACCC
TTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGT
ACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGT
AATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGT
TGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGTGATT
ATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAG
CTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCGATGAT
TGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTG
GTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTG
CGTGGTGTGGCCATGAACCCAGTGGAGCATCCT
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