CF835143

Overview
NameCF835143
Unique NameCF835143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BACST (50S ribosomal protein L2 OS=Bacillus stearothermophilus GN=rplB PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 68/211 (32.23%), Postives = 101/211 (47.87%), Query Frame = 1
Query:   19 RAQRKGAGSVFLSHTH--HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            RA R   G + + H    H++   Q+R +DF      + G VA I +DP R A +A + +        +K   IA + +  G  +  G  A + +GN LP+ +IP G +V N+E   G  G L RA+G  A ++    +     V+L SG  ++I   CRA +G+V   G  +  L+  G A       R  W    P VRG  MNPV+HP
Sbjct:   40 RAGRNNQGKITVRHQGGGHKR---QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVL--GKEGKYVIVRLASGEVRMILGKCRATVGEV---GNEQHELVNIGKA------GRARWLGIRPTVRGSVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BACFR (50S ribosomal protein L2 OS=Bacteroides fragilis GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 64/189 (33.86%), Postives = 93/189 (49.21%), Query Frame = 1
Query:   67 HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            HRK     R +DF      +  VV  I +DP R A +A + +        +K   IA  G+  G  +  G+ A   +GN LP+++IP G V+ N+E   G    L R++G++A + S   +     +KLPSG  + I S C+A IG V       +   KAG +  + R  RN     RGV MNPV+HP
Sbjct:   58 HRK---VIRIVDFKRNKDGVPAVVKTIEYDPNRSARIALLFYADG-----EKRYIIAPNGLQVGATLMSGENAAPEIGNALPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSTCKATIGSVGNSDHGLESSGKAGRSRWQGRRPRN-----RGVVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BACFN (50S ribosomal protein L2 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 64/189 (33.86%), Postives = 93/189 (49.21%), Query Frame = 1
Query:   67 HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            HRK     R +DF      +  VV  I +DP R A +A + +        +K   IA  G+  G  +  G+ A   +GN LP+++IP G V+ N+E   G    L R++G++A + S   +     +KLPSG  + I S C+A IG V       +   KAG +  + R  RN     RGV MNPV+HP
Sbjct:   58 HRK---VIRIVDFKRNKDGVPAVVKTIEYDPNRSARIALLFYADG-----EKRYIIAPNGLQVGATLMSGENAAPEIGNALPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSTCKATIGSVGNSDHGLESSGKAGRSRWQGRRPRN-----RGVVMNPVDHP 231          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_ANATD (50S ribosomal protein L2 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 69/210 (32.86%), Postives = 99/210 (47.14%), Query Frame = 1
Query:   22 AQRKGAGSVFLSHTH--HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633
            A R   G + + H    H+K   + R +DF      +   V  I +DP R A LA + +        ++   IA EG+  G  V  G  A + VGN LP+++IP G ++ N+E   G  G L R++G  A +++   +     +KLPSG  + +   CRA IGQV         + KAG         R  W    P VRG AMNPV+HP
Sbjct:   42 AGRNNQGRITVRHRGGGHKK---KIRIVDFKRDKDGIPAKVEAIEYDPNRTAFLALLCYADG-----ERRYIIAPEGLKVGDTVMSGPDADIKVGNALPLKNIPVGTMIHNIELMPGKGGQLCRSAGSVAQLMA--KEGKYALIKLPSGELRYVSQECRATIGQVGNLDHENVRIGKAG---------RKRWMGIRPTVRGSAMNPVDHP 232          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_OENPA (50S ribosomal protein L2, chloroplastic OS=Oenothera parviflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 1
Query:   31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            KG  +  +    HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP++ +P G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I + C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV+HP
Sbjct:   39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHP 228          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_OENGL (50S ribosomal protein L2, chloroplastic OS=Oenothera glazioviana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 1
Query:   31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            KG  +  +    HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP++ +P G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I + C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV+HP
Sbjct:   39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHP 228          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_OENEH (50S ribosomal protein L2, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 1
Query:   31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            KG  +  +    HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP++ +P G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I + C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV+HP
Sbjct:   39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHP 228          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_OENBI (50S ribosomal protein L2, chloroplastic OS=Oenothera biennis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 1
Query:   31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            KG  +  +    HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP++ +P G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I + C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV+HP
Sbjct:   39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHP 228          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_OENAR (50S ribosomal protein L2, chloroplastic OS=Oenothera argillicola GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 1
Query:   31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            KG  +  +    HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP++ +P G  + N+E  +G  G LARA+G  A +I+    + T  +KLPSG  ++I + C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV+HP
Sbjct:   39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHP 228          
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_EMIHU (50S ribosomal protein L2, chloroplastic OS=Emiliania huxleyi GN=rpl2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 65/190 (34.21%), Postives = 98/190 (51.58%), Query Frame = 1
Query:   64 HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633
            H RK     R +DF  ++      VA I +DP R A +A + + +       K   +A   +  G  V  G +A + +GN LP+ +IP G+ V N+E  +G  G +AR++G YA II+   + D   +KLPS   +++   C A +GQV         L KAG +  ++  KR   PKVRGV  NP++HP
Sbjct:   58 HKRK----HRIIDFKRKSIATTARVATIEYDPNRNARIALLHYENGL-----KRYILAPRSLKVGMEVCSGPEAPIEIGNSLPLAAIPLGSTVHNIELTLGKGGQIARSAGTYAQIIA--KEGDFVTLKLPSNEVRLVYKECYATLGQVGNIDAINTCLGKAGRS--RWLGKR---PKVRGVVKNPIDHP 231          
The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BACST1.191e-1832.2350S ribosomal protein L2 OS=Bacillus stearothermop... [more]
RL2_BACFR1.191e-1833.8650S ribosomal protein L2 OS=Bacteroides fragilis G... [more]
RL2_BACFN1.191e-1833.8650S ribosomal protein L2 OS=Bacteroides fragilis (... [more]
RL2_ANATD1.191e-1832.8650S ribosomal protein L2 OS=Anaerocellum thermophi... [more]
RK2_OENPA1.191e-1832.0250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENGL1.191e-1832.0250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENEH1.191e-1832.0250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENBI1.191e-1832.0250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENAR1.191e-1832.0250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_EMIHU1.191e-1834.2150S ribosomal protein L2, chloroplastic OS=Emilian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bp
GAAATGGGTCCTTTGATTCGCGCACAGCGAAAGGGTGCAGGTTCGGTCTT
CCTGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCG
ACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATT
CACGATCCGGGTCGGGGTGCCCCGCTGGCCCGAGTCACCTTTCGTCACCC
TTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGT
ACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGT
AATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGT
TGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGTGATT
ATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAG
CTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCGATGAT
TGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTG
GTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTG
CGTGGTGTGGCCATGAACCCAGTGGAGCATCCT
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