CF835143
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BACST (50S ribosomal protein L2 OS=Bacillus stearothermophilus GN=rplB PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 68/211 (32.23%), Postives = 101/211 (47.87%), Query Frame = 1 Query: 19 RAQRKGAGSVFLSHTH--HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 RA R G + + H H++ Q+R +DF + G VA I +DP R A +A + + +K IA + + G + G A + +GN LP+ +IP G +V N+E G G L RA+G A ++ + V+L SG ++I CRA +G+V G + L+ G A R W P VRG MNPV+HP Sbjct: 40 RAGRNNQGKITVRHQGGGHKR---QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVL--GKEGKYVIVRLASGEVRMILGKCRATVGEV---GNEQHELVNIGKA------GRARWLGIRPTVRGSVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BACFR (50S ribosomal protein L2 OS=Bacteroides fragilis GN=rplB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 64/189 (33.86%), Postives = 93/189 (49.21%), Query Frame = 1 Query: 67 HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 HRK R +DF + VV I +DP R A +A + + +K IA G+ G + G+ A +GN LP+++IP G V+ N+E G L R++G++A + S + +KLPSG + I S C+A IG V + KAG + + R RN RGV MNPV+HP Sbjct: 58 HRK---VIRIVDFKRNKDGVPAVVKTIEYDPNRSARIALLFYADG-----EKRYIIAPNGLQVGATLMSGENAAPEIGNALPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSTCKATIGSVGNSDHGLESSGKAGRSRWQGRRPRN-----RGVVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_BACFN (50S ribosomal protein L2 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rplB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 64/189 (33.86%), Postives = 93/189 (49.21%), Query Frame = 1 Query: 67 HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 HRK R +DF + VV I +DP R A +A + + +K IA G+ G + G+ A +GN LP+++IP G V+ N+E G L R++G++A + S + +KLPSG + I S C+A IG V + KAG + + R RN RGV MNPV+HP Sbjct: 58 HRK---VIRIVDFKRNKDGVPAVVKTIEYDPNRSARIALLFYADG-----EKRYIIAPNGLQVGATLMSGENAAPEIGNALPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSTCKATIGSVGNSDHGLESSGKAGRSRWQGRRPRN-----RGVVMNPVDHP 231
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_ANATD (50S ribosomal protein L2 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 69/210 (32.86%), Postives = 99/210 (47.14%), Query Frame = 1 Query: 22 AQRKGAGSVFLSHTH--HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 633 A R G + + H H+K + R +DF + V I +DP R A LA + + ++ IA EG+ G V G A + VGN LP+++IP G ++ N+E G G L R++G A +++ + +KLPSG + + CRA IGQV + KAG R W P VRG AMNPV+HP Sbjct: 42 AGRNNQGRITVRHRGGGHKK---KIRIVDFKRDKDGIPAKVEAIEYDPNRTAFLALLCYADG-----ERRYIIAPEGLKVGDTVMSGPDADIKVGNALPLKNIPVGTMIHNIELMPGKGGQLCRSAGSVAQLMA--KEGKYALIKLPSGELRYVSQECRATIGQVGNLDHENVRIGKAG---------RKRWMGIRPTVRGSAMNPVDHP 232
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_OENPA (50S ribosomal protein L2, chloroplastic OS=Oenothera parviflora GN=rpl2-A PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 1 Query: 31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 KG + + HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP++ +P G + N+E +G G LARA+G A +I+ + T +KLPSG ++I + C A +GQV G +K L +AG+ ++ KR P VRGV MNPV+HP Sbjct: 39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHP 228
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_OENGL (50S ribosomal protein L2, chloroplastic OS=Oenothera glazioviana GN=rpl2-A PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 1 Query: 31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 KG + + HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP++ +P G + N+E +G G LARA+G A +I+ + T +KLPSG ++I + C A +GQV G +K L +AG+ ++ KR P VRGV MNPV+HP Sbjct: 39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHP 228
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_OENEH (50S ribosomal protein L2, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl2-A PE=3 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 1 Query: 31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 KG + + HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP++ +P G + N+E +G G LARA+G A +I+ + T +KLPSG ++I + C A +GQV G +K L +AG+ ++ KR P VRGV MNPV+HP Sbjct: 39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHP 228
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_OENBI (50S ribosomal protein L2, chloroplastic OS=Oenothera biennis GN=rpl2-A PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 1 Query: 31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 KG + + HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP++ +P G + N+E +G G LARA+G A +I+ + T +KLPSG ++I + C A +GQV G +K L +AG+ ++ KR P VRGV MNPV+HP Sbjct: 39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHP 228
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_OENAR (50S ribosomal protein L2, chloroplastic OS=Oenothera argillicola GN=rpl2-A PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 1 Query: 31 KGAGSVFLSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 KG + + HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP++ +P G + N+E +G G LARA+G A +I+ + T +KLPSG ++I + C A +GQV G +K L +AG+ ++ KR P VRGV MNPV+HP Sbjct: 39 KGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLK-MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHP 228
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RK2_EMIHU (50S ribosomal protein L2, chloroplastic OS=Emiliania huxleyi GN=rpl2 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 65/190 (34.21%), Postives = 98/190 (51.58%), Query Frame = 1 Query: 64 HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 H RK R +DF ++ VA I +DP R A +A + + + K +A + G V G +A + +GN LP+ +IP G+ V N+E +G G +AR++G YA II+ + D +KLPS +++ C A +GQV L KAG + ++ KR PKVRGV NP++HP Sbjct: 58 HKRK----HRIIDFKRKSIATTARVATIEYDPNRNARIALLHYENGL-----KRYILAPRSLKVGMEVCSGPEAPIEIGNSLPLAAIPLGSTVHNIELTLGKGGQIARSAGTYAQIIA--KEGDFVTLKLPSNEVRLVYKECYATLGQVGNIDAINTCLGKAGRS--RWLGKR---PKVRGVVKNPIDHP 231 The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bpback to top |