CF835143
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 5.883e-34 Identity = 84/211 (39.81%), Postives = 115/211 (54.50%), Query Frame = 1 Query: 4 MGPLIRAQRKGAGS-VFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 MG I+ Q +G G + + +H K A+ + L G ++GV+ +I HDP R P+A V + K + EG+ G V G +A + GN LP+ IP G+ +CN+E GD G RASG A+II D VK+PSG K S C A +G VAGGGR EKP +KAG +HK + + WP+VRGVAMN ++HP Sbjct: 1 MGHRIKTQNRGRGGPTYRAPSHQYK--AELKHL--GNDKVTVRGVIIDIEHDPARHTPIALVRLEGEGK----KVYLLVTEGLGVGDQVAWGPEAEVKNGNTLPISKIPTGSYICNIEARPGDGGKFVRASGVQAIIIDKTVDR--VGVKMPSGKMKWFSSRCLATVGVVAGGGRGEKPFVKAGKKFHKVKSQATYWPRVRGVAMNVIDHP 201
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.003e-33 Identity = 83/211 (39.34%), Postives = 114/211 (54.03%), Query Frame = 1 Query: 4 MGPLIRAQRKGAGS-VFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 MG I Q +G G + + +H K + FG ++ V +I HDP R P+A V + +KE + EG+ GQ + G +AT++ GN LP+ +IP G VCN+E GD G R+SG AVII + V++PSG K C A +G VAGGGR +KP+LKAG YHK + WP+VRGVAMN ++HP Sbjct: 1 MGHRISTQSRGKGGPTYRAPSHQYKAELKH----FGSALETVRATVIDIEHDPARHTPIAVVKIEG--KASDKKEYALITEGVGIGQELVWGPEATVVNGNSLPLSAIPTGVAVCNIEARPGDGGKFVRSSGVQAVIIGKSAGK--VGVRMPSGKPKWFNEACLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDHP 203
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.228e-32 Identity = 80/210 (38.10%), Postives = 109/210 (51.90%), Query Frame = 1 Query: 4 MGPLIRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 MG I Q +G G HR A G+ + G + +I HDP R AP+A V K + EG+ G+ V G + GN LP++SIP G+ +CN+E D G R++G AV++ + D V++PSG K + CRA +G VAGGGR EKP +KAGN HK R + WP+VRGVAMN ++HP Sbjct: 1 MGHRITTQNRGRGGPTYRAPSHRYKAALKH---IGDGTKSISGSIIDIEHDPARNAPIALVQLEDG-----SKVYILVTEGIGIGETVAWGADVKVKNGNTLPLQSIPTGSYICNIESRPNDGGKFVRSTGVQAVVV--DKIGDRIGVRMPSGKTKWFNARCRATVGIVAGGGRVEKPFVKAGNKSHKMRNTASNWPRVRGVAMNVIDHP 200
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.227e-31 Identity = 80/211 (37.91%), Postives = 115/211 (54.50%), Query Frame = 1 Query: 4 MGPLIRAQRKGAGSV-FLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 MG + QR G G++ F + R G ++ ++ G+ V +I+H+PG P+A+V ++ A +G+ +GQ + G+ + +GN++P + +PEG V NVE H GD G AR +G YA+++ + R LPSG K I +G VAGGG EKPLLKAGN Y K++VK WP VRGVAMN V HP Sbjct: 1 MGKKLLQQRAGRGNINFRNPGWLRVGKVRYPTI-----TGHHIAKVVDILHNPGMTEPVAKVKLDTGIQFF-----IPAVQGLISGQKIEVGEGSPASLGNIVPAKDLPEGVYVSNVELHRGDGGRYARTAGSYAIVVGKSEGKVILR--LPSGKIKEIDENALVTVGTVAGGGVLEKPLLKAGNNYWKYKVKATKWPDVRGVAMNVVSHP 199
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29 Identity = 79/210 (37.62%), Postives = 103/210 (49.05%), Query Frame = 1 Query: 4 MGPLIRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 MG I Q +G G HR A GE Y + +I HDP R P+A V + + EGM G + G A + GN LP++ IP G+ VCN+E + D G RASG A + V++PSG+ K CRA IG VAGGGR+EKP +KAG YHK + + WP+VRG AMN ++HP Sbjct: 1 MGHRITTQSRGHGGPTYRAPSHRYKAALKHLGRAGETVSYK---IIDIEHDPARHTPIALVDVPDG-----ENTYVLVTEGMGIGDVLTWGADAEIRNGNTLPLQEIPTGSSVCNIEAYPNDGGKFVRASGVQATVTDKMEGR--VAVRMPSGSTKWFNGQCRATIGIVAGGGRSEKPFVKAGKKYHKMKNTASNWPRVRGFAMNVIDHP 200
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 7.442e-29 Identity = 77/210 (36.67%), Postives = 104/210 (49.52%), Query Frame = 1 Query: 4 MGPLIRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 M I AQ +G G HR A + G+ + + G V +I HDP R AP+A +K +A EG+ G V G T+ GN LP+ IP GA VCN+E D G R+SG A++I D+ +++PSG K C A +G VAGGGR EKP +KAG + R WP+V+GV MN ++HP Sbjct: 1 MAHRIIAQNRGKGGPTYRAPSHRYKAALRHA---GKNDALVSGNVIDIEHDPARHAPIALARLDSG-----EKIYVLATEGLGVGDTVSWGTGGTVKNGNTLPLGEIPVGAYVCNIEARPNDGGKFVRSSGVQALVIG-KADDGRVGIRMPSGKNKWFNGACMATVGIVAGGGRGEKPFVKAGKKHFHVRSSSERWPRVKGVCMNVIDHP 201
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.658e-28 Identity = 78/204 (38.24%), Postives = 109/204 (53.43%), Query Frame = 1 Query: 25 QRKGAGS-VFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 QR+G GS F S TH G + + D +KG V +I D APL V + + + L A G+ G VY GK+A +G++ P+ IPEG + +E++ GD G L RASGD+A+++ D V+LPSG K + + RA+IG +AGGGR EKP +KAGN Y+ + WP V GV N +HP Sbjct: 9 QRRGRGSPTFRSPTHRAAGKVKIPTFD----GDLVKGKVVALIKDSIHYAPLMVVKWENG-----AQSLLPAPLGISVGDTVYYGKEAPNAIGSIKPLSEIPEGTKIYMLENNPGDGGKLVRASGDFALLVQKL--GDKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDHP 201
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 4.823e-28 Identity = 73/208 (35.10%), Postives = 112/208 (53.85%), Query Frame = 1 Query: 10 PLIRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 PL+R + +G G F + T + A++ + + GE+ +G V +++H+ GR APLA++ F A G G + G K+ + GNV+ V++IP+G VCNVE H GD G + +++G A + SH +KLPSG + RAM+G +AGGG +E+P + AG + +FR K +P VRGVA HP Sbjct: 5 PLVRRRGRG-GMQFRAATTGKIARAKYPAFELGEQR---EGTVIDLVHERGRDAPLAKIRFEDGI-----VSYVPAVLGTRVGSSMNFGLKSEIRDGNVISVQNIPDGTTVCNVEKHYGDGGAIVKSAGGNATVFSHGEGGVV--LKLPSGRFSTLNPKNRAMVGTLAGGGVSERPFMSAGGKWRRFRSKGRKYPIVRGVAQAAYVHP 201
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.075e-27 Identity = 73/209 (34.93%), Postives = 114/209 (54.55%), Query Frame = 1 Query: 10 PLIRAQRKGAGSVFLSHTHHRKGP-AQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 PL+R + +G G+ F S + + G A + E++ +G + +++H+ GR APLA+V F A G G+ + G K+ + GNV+ +++IP+G +VCN+E H GD G + +++G A + SH + T VKLPSG + RAMIG +AGGG +E+P + AG + F+ K +P VRGVA HP Sbjct: 5 PLVRRRGRG-GNQFRSTSTGKVGTKANYPRFPLSEQH---EGEIIDLVHERGREAPLAKVRFEDG-----SVSFVPAVLGAKVGETLQFGLKSKIEKGNVISIQNIPDGTIVCNIEKHFGDGGAIVKSAGTDATVFSHGDEGVT--VKLPSGKFTTLNPKNRAMIGTLAGGGASERPFMSAGGKWRNFKAKGKKYPIVRGVAQAAYVHP 202
BLAST of CF835143 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25 Identity = 77/210 (36.67%), Postives = 103/210 (49.05%), Query Frame = 1 Query: 4 MGPLIRAQRKGAGSVFLSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 633 MG I QR+G GS+ HR + L GE VV +IIH PGR +PL + +K IA G Y GQ + G T+ G + +IP+G+ V N+E GD G R++G +A+++SH +KLPSG+ + CRA +G VA G + P+LKAG H R K VRGVAMN V HP Sbjct: 1 MGKHIIPQRRGHGSLVYRSPSHRH-VVDVKHLKPGEY------VVKDIIHAPGRNSPLLELVDS-----TGKKVYQIAFTGAYVGQKIVAGNVDTINPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHG---SRVTLKLPSGSMRDFDPRCRATVGVVAASGIIDAPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHP 195 The following BLAST results are available for this feature:
BLAST of CF835143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835143 ID=CF835143; Name=CF835143; organism=Citrus sinensis; type=EST; length=633bpback to top |