CF835151

Overview
NameCF835151
Unique NameCF835151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:1429..1919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.436e-18
Identity = 46/68 (67.65%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  288 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 491
            AKSNYNFEKPFLYLARKLAGD NL FVE PALAPP+V ID              A+QPLPDDDDD  E
Sbjct:  154 AKSNYNFEKPFLYLARKLAGDGNLHFVETPALAPPDVTIDLAAQQQHEAELAAAAAQPLPDDDDDLIE 221          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSI (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.436e-18
Identity = 46/68 (67.65%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  288 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 491
            AKSNYNFEKPFLYLARKLAGD NL FVE PALAPP+V ID              A+QPLPDDDDD  E
Sbjct:  154 AKSNYNFEKPFLYLARKLAGDGNLHFVETPALAPPDVTIDLAAQQQHEAELAAAAAQPLPDDDDDLIE 221          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 46/68 (67.65%), Postives = 47/68 (69.12%), Query Frame = -1
Query:  288 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 491
            AKSNYNFEKPFLYLARKLAGDPNL FVE  AL PPEV ID              A+QPLPDDDDD  E
Sbjct:  154 AKSNYNFEKPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDDLIE 221          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 46/68 (67.65%), Postives = 47/68 (69.12%), Query Frame = -1
Query:  288 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 491
            AKSNYNFEKPFLYLARKLAGDPNL FVE  AL PPEV ID              A+QPLPDDDDD  E
Sbjct:  154 AKSNYNFEKPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDDLIE 221          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 42/65 (64.62%), Postives = 44/65 (67.69%), Query Frame = -1
Query:  297 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDD 491
            AKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEVQ+D              A   LPDDDDD
Sbjct:  150 AKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDNAAKADLPDDDDD 214          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: SPI1_SCHPO (GTP-binding nuclear protein spi1 OS=Schizosaccharomyces pombe GN=spi1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.025e-15
Identity = 40/64 (62.50%), Postives = 45/64 (70.31%), Query Frame = -1
Query:  300 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDD 491
            AKSNYNFEKPFL+LARKL G+PNL FV  PALAPPEVQ+D              A+ PLPD+DD
Sbjct:  150 AKSNYNFEKPFLWLARKLVGNPNLEFVASPALAPPEVQVDQQLLAQYQQEMNEAAAMPLPDEDD 213          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.512e-15
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = -1
Query:  297 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDD 491
            AKSNYNFEKPFL+LARKL GDPNL FVE PALAPPE+ +D              +   LPD+DDD
Sbjct:  150 AKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQYEHDLKVASETALPDEDDD 214          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: GSP2_YEAST (GTP-binding nuclear protein GSP2/CNR2 OS=Saccharomyces cerevisiae GN=GSP2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.892e-15
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = -1
Query:  300 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDD 491
            AKSNYNFEKPFL+LARKLAG+P L FV  PALAPPEVQ+D               + PLPD+DD
Sbjct:  154 AKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMHQYQQEMDQATALPLPDEDD 217          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: GSP1_YEAST (GTP-binding nuclear protein GSP1/CNR1 OS=Saccharomyces cerevisiae GN=GSP1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.892e-15
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = -1
Query:  300 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDD 491
            AKSNYNFEKPFL+LARKLAG+P L FV  PALAPPEVQ+D               + PLPD+DD
Sbjct:  153 AKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 216          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: GSP1_CANGA (GTP-binding nuclear protein GSP1/Ran OS=Candida glabrata GN=GSP1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.892e-15
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = -1
Query:  300 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDD 491
            AKSNYNFEKPFL+LARKLAG+P L FV  PALAPPEVQ+D               + PLPD+DD
Sbjct:  148 AKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 211          
The following BLAST results are available for this feature:
BLAST of CF835151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RAN1_ORYSJ7.436e-1867.65GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN1_ORYSI7.436e-1867.65GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN2_ORYSJ9.712e-1867.65GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN2_ORYSI9.712e-1867.65GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN_CAEEL1.187e-1564.62GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
SPI1_SCHPO2.025e-1562.50GTP-binding nuclear protein spi1 OS=Schizosaccharo... [more]
RAN_DANRE4.512e-1560.00GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
GSP2_YEAST5.892e-1560.94GTP-binding nuclear protein GSP2/CNR2 OS=Saccharom... [more]
GSP1_YEAST5.892e-1560.94GTP-binding nuclear protein GSP1/CNR1 OS=Saccharom... [more]
GSP1_CANGA5.892e-1560.94GTP-binding nuclear protein GSP1/Ran OS=Candida gl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835151 ID=CF835151; Name=CF835151; organism=Citrus sinensis; type=EST; length=491bp
GAACCTCCTTTTGTTATGCATAAAAGGATTGGAATGGCATAATCCACGAA
CCTGAAACATCATTCCAGTAATAAGAAAACTCGCAAAAAAAAACAAGTAT
AAAAAGAGTCTCCAACGGGTATCTAAAGGTACAACCTATCTACTATAATC
CATTGTTCTCGATGGGCACGCCTACGCTGATAACCAAATCTCCGCCATGT
GTTGAAAATTTCCAAAATAACAGCATTTTTAAGTCAAGCAGCAGCATGAG
AGGTTGCGCCTACACCCGTCCAAGCAGATCCTCTCTACTCAAATGCATCA
TCATCGTCATCAGGAAGAGGCTGGCTAGCTGCTGCGGCAAGCTCGGCTTC
ATGTTGTTGCTGTGCAGCTAAGTCAATCTGGACTTCTGGAGGAGCGAGAG
CAGGACATTCCACGAAGGGCAAATTTGGGTCCCCAGCAAGCTTCCTGGCA
AGGTACAAGAAAGGTTTCTCAAAATTGTAGTTGCTCTTGGC
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