CF835151

Overview
NameCF835151
Unique NameCF835151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:1429..1919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.714e-14
Identity = 38/64 (59.38%), Postives = 43/64 (67.19%), Query Frame = -1
Query:  300 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDD 491
            AKSNYNFEKPFL+LARKL G+P L FV  PALAPPEVQ+D               + PLPD+DD
Sbjct:  148 AKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPEVQVDADLMQKYQQEMEQATALPLPDEDD 211          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN_BRUMA (GTP-binding nuclear protein Ran OS=Brugia malayi PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.239e-14
Identity = 40/65 (61.54%), Postives = 44/65 (67.69%), Query Frame = -1
Query:  297 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDD 491
            AKSNYNFEKP L+LARKL GDPNL FV  PALAPPEVQ+D              A+  LPDDD+D
Sbjct:  150 AKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELPDDDED 214          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.924e-14
Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = -1
Query:  297 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDD 491
            AKSNYNFEKPFL+LARKL GDPNL FV  PALAPPE+ +D              +   LPD+DDD
Sbjct:  150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMDPSLAAQYEHDLKVASETALPDEDDD 214          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN_CARAU (GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.819e-14
Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = -1
Query:  297 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDD 491
            AKSNYNFEKPFL+LARKL GDPNL FVE  ALAPPE+ +D              +   LPD+DDD
Sbjct:  150 AKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAMDPSLAAQYEHDLKVASETALPDEDDD 214          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN_XENTR (GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.988e-14
Identity = 38/65 (58.46%), Postives = 42/65 (64.62%), Query Frame = -1
Query:  297 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDD 491
            AKSNYNFEKPFL+LARKL GDPN  FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  151 AKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMDPALAAQYEQDLQHAQATALPDEDDD 215          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN_ONCVO (GTP-binding nuclear protein Ran OS=Onchocerca volvulus GN=ran-1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.515e-14
Identity = 39/65 (60.00%), Postives = 43/65 (66.15%), Query Frame = -1
Query:  297 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDD 491
            AKSNYNFEKP L+L RKL GDPNL FV  PALAPPEVQ+D              A+  LPDDD+D
Sbjct:  150 AKSNYNFEKPSLWLVRKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELPDDDED 214          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.451e-13
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = -1
Query:  297 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDD 491
            AKSNYNFEKPF +LARKL GDPNL FV  PALAPPEV +D               +  LPD++DD
Sbjct:  151 AKSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.895e-13
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = -1
Query:  297 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDD 491
            AKSNYNFEKPFL+LARKL GDPNL FV  PAL PPEV++D               +  LPD+D++
Sbjct:  151 AKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERDLQEAQATALPDEDEE 215          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.233e-13
Identity = 36/65 (55.38%), Postives = 42/65 (64.62%), Query Frame = -1
Query:  297 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDD 491
            A+SNYNFEKPF +LARKL GDPNL FV  PALAPPEV +D               +  LPD++DD
Sbjct:  151 ARSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215          
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.515e-13
Identity = 37/67 (55.22%), Postives = 42/67 (62.69%), Query Frame = -1
Query:  291 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAF 491
            AKSNYNFEKPFL+LARKLAG+P+L FV  PAL P E  ID               + PLPD+DD  F
Sbjct:  148 AKSNYNFEKPFLWLARKLAGNPSLEFVATPALRPAETAIDPEVMQAMQKDLEEANAMPLPDEDDADF 214          
The following BLAST results are available for this feature:
BLAST of CF835151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GSP1_CANAL1.714e-1459.38GTP-binding nuclear protein GSP1/Ran OS=Candida al... [more]
RAN_BRUMA2.239e-1461.54GTP-binding nuclear protein Ran OS=Brugia malayi P... [more]
RAN_SALSA2.924e-1458.46GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RAN_CARAU3.819e-1458.46GTP-binding nuclear protein Ran OS=Carassius aurat... [more]
RAN_XENTR4.988e-1458.46GTP-binding nuclear protein Ran OS=Xenopus tropica... [more]
RAN_ONCVO6.515e-1460.00GTP-binding nuclear protein Ran OS=Onchocerca volv... [more]
RANT_RAT1.451e-1356.92GTP-binding nuclear protein Ran, testis-specific i... [more]
RAN_DROME1.895e-1355.38GTP-binding nuclear protein Ran OS=Drosophila mela... [more]
RANT_MOUSE3.233e-1355.38GTP-binding nuclear protein Ran, testis-specific i... [more]
GSP1_YARLI5.515e-1355.22GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835151 ID=CF835151; Name=CF835151; organism=Citrus sinensis; type=EST; length=491bp
GAACCTCCTTTTGTTATGCATAAAAGGATTGGAATGGCATAATCCACGAA
CCTGAAACATCATTCCAGTAATAAGAAAACTCGCAAAAAAAAACAAGTAT
AAAAAGAGTCTCCAACGGGTATCTAAAGGTACAACCTATCTACTATAATC
CATTGTTCTCGATGGGCACGCCTACGCTGATAACCAAATCTCCGCCATGT
GTTGAAAATTTCCAAAATAACAGCATTTTTAAGTCAAGCAGCAGCATGAG
AGGTTGCGCCTACACCCGTCCAAGCAGATCCTCTCTACTCAAATGCATCA
TCATCGTCATCAGGAAGAGGCTGGCTAGCTGCTGCGGCAAGCTCGGCTTC
ATGTTGTTGCTGTGCAGCTAAGTCAATCTGGACTTCTGGAGGAGCGAGAG
CAGGACATTCCACGAAGGGCAAATTTGGGTCCCCAGCAAGCTTCCTGGCA
AGGTACAAGAAAGGTTTCTCAAAATTGTAGTTGCTCTTGGC
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