CF835151

Overview
NameCF835151
Unique NameCF835151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:1429..1919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSJ (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica GN=RAN3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.096e-12
Identity = 38/65 (58.46%), Postives = 42/65 (64.62%), Query Frame = -1 
Query:  297 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDD 491
            AKSNYNFEKPFLYLARKL GD NL FVE  AL P +V ID              A+ PLPD+D+D
Sbjct:  158 AKSNYNFEKPFLYLARKLTGDMNLRFVEELALLPADVTIDLIAQQKIETEIAAAAAMPLPDEDED 222
[Close]
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSI (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. indica GN=RAN3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.096e-12
Identity = 38/65 (58.46%), Postives = 42/65 (64.62%), Query Frame = -1 
Query:  297 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDD 491
            AKSNYNFEKPFLYLARKL GD NL FVE  AL P +V ID              A+ PLPD+D+D
Sbjct:  158 AKSNYNFEKPFLYLARKLTGDMNLRFVEELALLPADVTIDLIAQQKIETEIAAAAAMPLPDEDED 222
[Close]
BLAST of CF835151 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 34/65 (52.31%), Postives = 40/65 (61.54%), Query Frame = -1 
Query:  297 AKSNYNFEKPFLYLARKLAGDPNLPFVECPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDD 491
            AKSNYNFEKPFL+LARKL G+  L FV  PALAPP   +D              A  PLP+++DD
Sbjct:  148 AKSNYNFEKPFLWLARKLVGNNALEFVAAPALAPPTAVVDQELMEKYRAEMDEAAQMPLPNEEDD 212
The following BLAST results are available for this feature:
BLAST of CF835151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RAN3_ORYSJ2.096e-1258.46GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ORYSI2.096e-1258.46GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
GSP1_NEUCR3.952e-1152.31GTP-binding nuclear protein GSP1/Ran OS=Neurospora... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06M05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835151 ID=CF835151; Name=CF835151; organism=Citrus sinensis; type=EST; length=491bp
GAACCTCCTTTTGTTATGCATAAAAGGATTGGAATGGCATAATCCACGAA
CCTGAAACATCATTCCAGTAATAAGAAAACTCGCAAAAAAAAACAAGTAT
AAAAAGAGTCTCCAACGGGTATCTAAAGGTACAACCTATCTACTATAATC
CATTGTTCTCGATGGGCACGCCTACGCTGATAACCAAATCTCCGCCATGT
GTTGAAAATTTCCAAAATAACAGCATTTTTAAGTCAAGCAGCAGCATGAG
AGGTTGCGCCTACACCCGTCCAAGCAGATCCTCTCTACTCAAATGCATCA
TCATCGTCATCAGGAAGAGGCTGGCTAGCTGCTGCGGCAAGCTCGGCTTC
ATGTTGTTGCTGTGCAGCTAAGTCAATCTGGACTTCTGGAGGAGCGAGAG
CAGGACATTCCACGAAGGGCAAATTTGGGTCCCCAGCAAGCTTCCTGGCA
AGGTACAAGAAAGGTTTCTCAAAATTGTAGTTGCTCTTGGC
back to top