CF835154

Overview
NameCF835154
Unique NameCF835154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_EXIS2 (Nucleoside diphosphate kinase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=ndk PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.301e-34
Identity = 66/125 (52.80%), Postives = 89/125 (71.20%), Query Frame = -3
Query:  316 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN 690
            V+RGL+GEII R E++GF ++ +K+M V    A+ HY + + KPFFG L+ ++TSGPVVA+  EGE VV   R +IG T P ++ PGTIRGD A     N+IHGSDSVESA++E+ LWF   P+N
Sbjct:   13 VERGLIGEIIARIERKGFVIREMKMMQVTEELAQAHYAEHAEKPFFGELVTFLTSGPVVALRVEGEDVVTVSRMMIGKTKPTEALPGTIRGDFANTMSENVIHGSDSVESAERELGLWFQGQPLN 137          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_LISMO (Nucleoside diphosphate kinase OS=Listeria monocytogenes GN=ndk PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.631e-33
Identity = 71/135 (52.59%), Postives = 94/135 (69.63%), Query Frame = -3
Query:  289 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 690
            V+RGL+GEI+ R EK+G  +   KLM + R  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSDS ESAQ+EI L+F PD  +++Q ++  WI
Sbjct:   13 VERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAQREIQLFFAPDEILSYQKAVDTWI 147          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDKM_MOUSE (Nucleoside diphosphate kinase, mitochondrial OS=Mus musculus GN=Nme4 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.631e-33
Identity = 67/132 (50.76%), Postives = 88/132 (66.67%), Query Frame = -3
Query:  298 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLH 690
            VQR LVG +I RFE+ GF L G+K++        +HY DL  KPF+ +LI Y++SGPVVAM+WEG  VV   R +IG T+  ++APGTIRGD ++   RN+IH SDSV+ AQ+EI LWF     +NW    H
Sbjct:   48 VQRRLVGTVIQRFERRGFKLVGMKMLQAPESILAEHYRDLQRKPFYPALISYMSSGPVVAMVWEGPNVVHISRAMIGHTDSTEAAPGTIRGDFSVHISRNVIHASDSVDGAQREIELWFQSSELLNWADGGH 179          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_DESHY (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain Y51) GN=ndk PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.436e-33
Identity = 70/137 (51.09%), Postives = 96/137 (70.07%), Query Frame = -3
Query:  283 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 690
            VQRGLVG+II RFE +G  L G+KLM+V +  AE+HY +   K FF   ++YI S PVVAM+WEG+ VV   R ++GATNPA + PG+IRG   +   RN+IHGSDSV SA++EIAL+F P+   +++ +   W+ E
Sbjct:   13 VQRGLVGQIIARFETKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGKNVVALARELMGATNPANANPGSIRGSFGMDISRNVIHGSDSVASAEREIALYFRPEELCDYRKAGEEWLSE 149          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_DESHD (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=ndk PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.436e-33
Identity = 70/137 (51.09%), Postives = 96/137 (70.07%), Query Frame = -3
Query:  283 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 690
            VQRGLVG+II RFE +G  L G+KLM+V +  AE+HY +   K FF   ++YI S PVVAM+WEG+ VV   R ++GATNPA + PG+IRG   +   RN+IHGSDSV SA++EIAL+F P+   +++ +   W+ E
Sbjct:   13 VQRGLVGQIIARFEAKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGKNVVALARELMGATNPANANPGSIRGSFGMDISRNVIHGSDSVASAEREIALYFRPEELCDYRKAGEEWLSE 149          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_LISIN (Nucleoside diphosphate kinase OS=Listeria innocua GN=ndk PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.997e-33
Identity = 69/135 (51.11%), Postives = 96/135 (71.11%), Query Frame = -3
Query:  289 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 690
            V+RGL+GEI+ + EK+G  L   KLM + R  AE+HY +   KPFF  LI +ITSGPV AM+ EG+ V+KT R ++G TNP ++ PGTIR + AI T RN+IHGSDS ESA++EI L+F P   ++++ ++  WI
Sbjct:   13 VERGLIGEIVAKIEKKGIKLVAGKLMQIDRTLAEQHYAEHIGKPFFEDLIGFITSGPVFAMVLEGDDVIKTARRMMGKTNPLEADPGTIRAEYAIHTNRNVIHGSDSPESAKREIQLFFEPHEILSYEKAVDTWI 147          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_UNCMA (Nucleoside diphosphate kinase OS=Uncultured methanogenic archaeon RC-I GN=ndk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.306e-32
Identity = 68/137 (49.64%), Postives = 95/137 (69.34%), Query Frame = -3
Query:  283 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSL-HPWIYE 690
            VQRGLVGEII RFE+ G  + G+K++ V    A++HY + ++KPFF  L+ +I SGP VAM+ EG+  V   R+++G T P +SAPGTIRGD A+  GRN+IH SDS ESA++EI+L+F    I   + +   W+YE
Sbjct:   16 VQRGLVGEIISRFERRGLKIVGMKMLEVSEELAKQHYAEHAAKPFFPGLVSFIRSGPTVAMVIEGKDAVSMVRSMLGKTKPIESAPGTIRGDFALDMGRNVIHASDSPESAKREISLYFKTSEIATYARIDEQWLYE 152          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_LISMH (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=ndk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.306e-32
Identity = 69/135 (51.11%), Postives = 94/135 (69.63%), Query Frame = -3
Query:  289 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 690
            V+RGL+GEI+ R EK+G  +   KLM + R  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSDS+ESA++EI L+F P   +++Q ++  WI
Sbjct:   13 VERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSLESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_THETN (Nucleoside diphosphate kinase OS=Thermoanaerobacter tengcongensis GN=ndk PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 69/121 (57.02%), Postives = 86/121 (71.07%), Query Frame = -3
Query:  328 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 690
            V+RGL+GEI+ R+E +G  LK  K++T      EKHYE+   KPFF  LIEY++SGPV AM+ EGE  VK  R I GAT    + PGTIRGD A  T  N++HGSDSVESA++EIALWFP+
Sbjct:   16 VKRGLIGEILKRYENKGLRLKAAKVVTPSIELLEKHYEEHKGKPFFKPLIEYMSSGPVFAMVLEGENAVKLVRMINGATKVEDALPGTIRGDFASSTTYNVVHGSDSVESAKREIALWFPE 136          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_THEPX (Nucleoside diphosphate kinase OS=Thermoanaerobacter sp. (strain X514) GN=ndk PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.227e-32
Identity = 67/121 (55.37%), Postives = 88/121 (72.73%), Query Frame = -3
Query:  328 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 690
            V+RGL+GEI+ R+E +G  LK  K++T      EKHYE+   KP++  LI+Y++SGPV AM+ EGE  VK  R + GAT   ++ PGTIRGD AI T  NIIHGSDS+ESA++EIALWFP+
Sbjct:   13 VKRGLIGEILKRYENKGLRLKAAKVITPTIELLEKHYEEHKGKPYYKPLIQYMSSGPVFAMVLEGENAVKIVRLLNGATKVEEALPGTIRGDFAISTTFNIIHGSDSIESAKREIALWFPE 133          
The following BLAST results are available for this feature:
BLAST of CF835154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_EXIS25.301e-3452.80Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]
NDK_LISMO2.631e-3352.59Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDKM_MOUSE2.631e-3350.76Nucleoside diphosphate kinase, mitochondrial OS=Mu... [more]
NDK_DESHY3.436e-3351.09Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDK_DESHD3.436e-3351.09Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDK_LISIN9.997e-3351.11Nucleoside diphosphate kinase OS=Listeria innocua ... [more]
NDK_UNCMA1.306e-3249.64Nucleoside diphosphate kinase OS=Uncultured methan... [more]
NDK_LISMH1.306e-3251.11Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_THETN1.705e-3257.02Nucleoside diphosphate kinase OS=Thermoanaerobacte... [more]
NDK_THEPX2.227e-3255.37Nucleoside diphosphate kinase OS=Thermoanaerobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835154 ID=CF835154; Name=CF835154; organism=Citrus sinensis; type=EST; length=692bp
CCCCCCANGGTTTTTTTTTTTTTTTACATAAAAAGTGCAACCATCATGTG
CTAACCCTTATCAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAA
TATTGTATATGGCAACCACAAGAATGAAAGCAGCCAACATAACCAGAGAT
TGGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAA
CCATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGA
ACAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTG
AAGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTT
CTTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATGATATTCCTGCCC
GTCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGG
GTTGGTGGCTCCAATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCT
CCCAAATCATAGCAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAA
CCAAAGAAAGGCTTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGG
GCGGACCACAGTCATAAGCTTCAAACCCTTCAAGGAGAAACCCTCCTTCT
CAAATCTGATGATGATTTCACCAACAAGGCCTCTTTGGACCC
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