CF835154

Overview
NameCF835154
Unique NameCF835154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:166..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_CYAA5 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain ATCC 51142) GN=ndk PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.159e-43
Identity = 79/137 (57.66%), Postives = 107/137 (78.10%), Query Frame = -3
Query:  283 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 690
            VQRGLVGE+I RFE +GF+L GLKLM+V +  AE+HY+    +PFFGSL+E+I S PVVAM+WEG+GVV + R +IGATNP  + PGTIRGD  +  GRN+IHGSD++E+AQ+EI+LWF +  + +W+ +   W+YE
Sbjct:   13 VQRGLVGEVIGRFEAKGFTLVGLKLMSVSKELAEEHYDVHKERPFFGSLVEFICSSPVVAMVWEGDGVVASARKLIGATNPLSAEPGTIRGDFGVSVGRNLIHGSDAIETAQREISLWFNEKELSSWEPTAKTWLYE 149          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDKA2_BOVIN (Nucleoside diphosphate kinase A 2 OS=Bos taurus GN=NME1-2 PE=1 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 8.159e-43
Identity = 84/137 (61.31%), Postives = 102/137 (74.45%), Query Frame = -3
Query:  283 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 690
            VQRGL+GEII RFE++GF L  +K M       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEIALWF P+  +N++S    WIYE
Sbjct:   16 VQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFRPEELVNYKSCAQNWIYE 152          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK4_ARATH (Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.159e-43
Identity = 79/136 (58.09%), Postives = 106/136 (77.94%), Query Frame = -3
Query:  286 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIY 690
            VQRGL+ EII RFE++G+ L G+K+M   + FA+KHY DL  +PFF  L  +++SGPVVAM+WEGEGV++ GR +IGAT+P +S PGTIRGDLA+V GRNIIHGSD  E+A+ EI+LWF P+  +++ S+   WIY
Sbjct:   99 VQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEISLWFKPEELVSYTSNAEKWIY 234          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_NEUCR (Nucleoside diphosphate kinase OS=Neurospora crassa GN=ndk-1 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.066e-42
Identity = 84/137 (61.31%), Postives = 100/137 (72.99%), Query Frame = -3
Query:  283 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 690
            VQRGLVG II RFE  GF L  +KL    +   EKHYEDL++KPFF  LI+Y+ SGP+ AM+WEG+  VKTGRTI+GATNP  SAPGTIRGD A+  GRN+ HGSDSVE+A+KEIALWF    +N W      WI+E
Sbjct:   16 VQRGLVGNIISRFENRGFKLVAMKLTQPGQAHLEKHYEDLNTKPFFAGLIKYMNSGPICAMVWEGKDAVKTGRTILGATNPLASAPGTIRGDFALDMGRNVCHGSDSVENAKKEIALWFKPEELNQWNHHSAAWIFE 152          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDKB_RAT (Nucleoside diphosphate kinase B OS=Rattus norvegicus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.066e-42
Identity = 83/137 (60.58%), Postives = 102/137 (74.45%), Query Frame = -3
Query:  283 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 690
            VQRGLVGEII RFE++GF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI LWF P+  I+++S  H W+YE
Sbjct:   16 VQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFKPEELIDYKSCAHDWVYE 152          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDKA_RAT (Nucleoside diphosphate kinase A OS=Rattus norvegicus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.066e-42
Identity = 84/137 (61.31%), Postives = 103/137 (75.18%), Query Frame = -3
Query:  283 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 690
            VQRGLVGEII RFE++GF L GLK +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI+LWF P+  ++++S    WIYE
Sbjct:   16 VQRGLVGEIIKRFEQKGFRLVGLKFIQASEDLLKEHYIDLKDRPFFSGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEISLWFQPEELVDYKSCAQNWIYE 152          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK4_SPIOL (Nucleoside diphosphate kinase 4, chloroplastic OS=Spinacia oleracea GN=NDK4 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.066e-42
Identity = 79/136 (58.09%), Postives = 105/136 (77.21%), Query Frame = -3
Query:  286 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIY 690
            VQRGL+ EI+ RFE++GF L  +K++   + FA+KHY DLS +PFF  L ++++SGPVVAM+WEGEGV+K GR +IGAT+P +S PGTIRGDLA+V GRNIIHGSD  E+A+ EI LWF P+  +N+  +   WIY
Sbjct:   97 VQRGLISEIVARFERKGFKLVAIKVVIPSKDFAQKHYHDLSERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNYTHNAEKWIY 232          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDKA_DROYA (Nucleoside diphosphate kinase (Fragment) OS=Drosophila yakuba GN=awd PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.392e-42
Identity = 84/137 (61.31%), Postives = 100/137 (72.99%), Query Frame = -3
Query:  283 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 690
            VQRGLVG+II RFE++GF L  LK     +   EKHY DLS++PFF  L+ Y+ SGPVV M+WEG  VVKTGR ++GATNPA S PGTIRGD  I  GRNIIHGSD+VESA+KEIALWF +   + W  +   WIYE
Sbjct:   14 VQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 150          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDKA_DROME (Nucleoside diphosphate kinase OS=Drosophila melanogaster GN=awd PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.392e-42
Identity = 84/137 (61.31%), Postives = 100/137 (72.99%), Query Frame = -3
Query:  283 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 690
            VQRGLVG+II RFE++GF L  LK     +   EKHY DLS++PFF  L+ Y+ SGPVV M+WEG  VVKTGR ++GATNPA S PGTIRGD  I  GRNIIHGSD+VESA+KEIALWF +   + W  +   WIYE
Sbjct:   17 VQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 153          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_COLLI (Nucleoside diphosphate kinase OS=Columba livia PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.818e-42
Identity = 84/137 (61.31%), Postives = 102/137 (74.45%), Query Frame = -3
Query:  283 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 690
            VQRGLVGEII RFE++GF L G+K +       ++HY DL  +PF+  L++Y+ SGP+VAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESAQKEI LWF P   I+++S  H WIYE
Sbjct:   17 VQRGLVGEIIKRFEQKGFRLVGMKFVHASEELLKQHYIDLKDRPFYPGLVKYMNSGPIVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAQKEINLWFKPAELIDFKSCAHDWIYE 153          
The following BLAST results are available for this feature:
BLAST of CF835154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_CYAA58.159e-4357.66Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDKA2_BOVIN8.159e-4361.31Nucleoside diphosphate kinase A 2 OS=Bos taurus GN... [more]
NDK4_ARATH8.159e-4358.09Nucleoside diphosphate kinase IV, chloroplastic/mi... [more]
NDK_NEUCR1.066e-4261.31Nucleoside diphosphate kinase OS=Neurospora crassa... [more]
NDKB_RAT1.066e-4260.58Nucleoside diphosphate kinase B OS=Rattus norvegic... [more]
NDKA_RAT1.066e-4261.31Nucleoside diphosphate kinase A OS=Rattus norvegic... [more]
NDK4_SPIOL1.066e-4258.09Nucleoside diphosphate kinase 4, chloroplastic OS=... [more]
NDKA_DROYA1.392e-4261.31Nucleoside diphosphate kinase (Fragment) OS=Drosop... [more]
NDKA_DROME1.392e-4261.31Nucleoside diphosphate kinase OS=Drosophila melano... [more]
NDK_COLLI1.818e-4261.31Nucleoside diphosphate kinase OS=Columba livia PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835154 ID=CF835154; Name=CF835154; organism=Citrus sinensis; type=EST; length=692bp
CCCCCCANGGTTTTTTTTTTTTTTTACATAAAAAGTGCAACCATCATGTG
CTAACCCTTATCAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAA
TATTGTATATGGCAACCACAAGAATGAAAGCAGCCAACATAACCAGAGAT
TGGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAA
CCATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGA
ACAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTG
AAGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTT
CTTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATGATATTCCTGCCC
GTCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGG
GTTGGTGGCTCCAATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCT
CCCAAATCATAGCAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAA
CCAAAGAAAGGCTTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGG
GCGGACCACAGTCATAAGCTTCAAACCCTTCAAGGAGAAACCCTCCTTCT
CAAATCTGATGATGATTTCACCAACAAGGCCTCTTTGGACCC
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