CF835154

Overview
NameCF835154
Unique NameCF835154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_YERP3 (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.729e-22
Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  334 VGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 675
            +G I  RFE  GF++   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D A     N +HGSD+VESAQ+EIA +F
Sbjct:   20 IGAIYARFESAGFNIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFADSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_VIBHB (Nucleoside diphosphate kinase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.729e-22
Identity = 52/124 (41.94%), Postives = 75/124 (60.48%), Query Frame = -3
Query:  319 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 690
            V+R L+GEI  R EK G  +   K++ +    A   Y +   KPFF +L E++TSGP++  + EGE  +   R ++G TNP ++A GTIR D A+    N +HGSDS ESA +EI  +FP+  I
Sbjct:   15 VERNLIGEIYHRIEKAGLRIVAAKMVHLTEEQASGFYAEHEGKPFFPALKEFMTSGPIMVQVLEGEDAIARYRELMGKTNPEEAACGTIRADYALSMRHNSVHGSDSPESAAREIEFFFPESEI 138          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_RHOCS (Nucleoside diphosphate kinase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.729e-22
Identity = 54/118 (45.76%), Postives = 74/118 (62.71%), Query Frame = -3
Query:  334 QRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 687
            +R L G+I  RFE+ G  +   K + + R  AE+ Y   + +PF+G L+ ++ SGPVV  + EGE  V   R I+GATNPA +APGTIR D A     N +HGSDS+E+A  EIA +F
Sbjct:   16 RRNLTGKINARFEEAGLRIVAQKRIRLTREQAEQFYIVHAERPFYGELVSFMISGPVVVQVLEGENAVARNREIMGATNPANAAPGTIRKDFAESIEANSVHGSDSLENAATEIAYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_YERPB (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 50/114 (43.86%), Postives = 72/114 (63.16%), Query Frame = -3
Query:  334 VGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 675
            +G I  RFE  GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D A     N +HGSD+VESAQ+EIA +F
Sbjct:   20 IGAIYARFESAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFADSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_COXBN (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 51/122 (41.80%), Postives = 76/122 (62.30%), Query Frame = -3
Query:  328 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PD 690
            V + ++G+I  RFEK G  +   K+  + +P AEK Y     +PF+  L++++T GPV+  + EGE  +   R I+GATNP ++ PGTIR D A     N +HGSD  E+A++EIA +F PD
Sbjct:   15 VAKNVIGQIYSRFEKAGLKIIAAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFADSIDANAVHGSDGPETAKEEIAFFFKPD 136          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_COXB1 (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain CbuK_Q154) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 51/122 (41.80%), Postives = 76/122 (62.30%), Query Frame = -3
Query:  328 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PD 690
            V + ++G+I  RFEK G  +   K+  + +P AEK Y     +PF+  L++++T GPV+  + EGE  +   R I+GATNP ++ PGTIR D A     N +HGSD  E+A++EIA +F PD
Sbjct:   15 VAKNVIGQIYSRFEKAGLKIISAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFADSIDANAVHGSDGPETAKEEIAFFFKPD 136          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_CAMC5 (Nucleoside diphosphate kinase OS=Campylobacter curvus (strain 525.92) GN=ndk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V++ +VG+II RFE  G  +   K + + +  A+  Y   S +PFF  L+E++TSGPVV M+ EGE  V   R ++GATNP ++A GTIR D A     N +HGSDS+E+A  EI  +F
Sbjct:   13 VKKNVVGKIIDRFESNGLRIAAAKKVKLSKCDAKAFYAVHSERPFFNDLVEFMTSGPVVVMVLEGENAVAKNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSLENAINEINFFF 131          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_YERPP (Nucleoside diphosphate kinase OS=Yersinia pestis (strain Pestoides F) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  334 VGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 675
            +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:   20 IGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_YERPN (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  334 VGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 675
            +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:   20 IGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_YERPG (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ndk PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  334 VGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 675
            +G I  RFE+ GF +   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D +     N +HGSD+VESAQ+EIA +F
Sbjct:   20 IGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFF 133          
The following BLAST results are available for this feature:
BLAST of CF835154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_YERP32.729e-2243.86Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]
NDK_VIBHB2.729e-2241.94Nucleoside diphosphate kinase OS=Vibrio harveyi (s... [more]
NDK_RHOCS2.729e-2245.76Nucleoside diphosphate kinase OS=Rhodospirillum ce... [more]
NDK_YERPB3.564e-2243.86Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]
NDK_COXBN3.564e-2241.80Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_COXB13.564e-2241.80Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_CAMC53.564e-2244.54Nucleoside diphosphate kinase OS=Campylobacter cur... [more]
NDK_YERPP4.655e-2242.98Nucleoside diphosphate kinase OS=Yersinia pestis (... [more]
NDK_YERPN4.655e-2242.98Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]
NDK_YERPG4.655e-2242.98Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835154 ID=CF835154; Name=CF835154; organism=Citrus sinensis; type=EST; length=692bp
CCCCCCANGGTTTTTTTTTTTTTTTACATAAAAAGTGCAACCATCATGTG
CTAACCCTTATCAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAA
TATTGTATATGGCAACCACAAGAATGAAAGCAGCCAACATAACCAGAGAT
TGGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAA
CCATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGA
ACAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTG
AAGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTT
CTTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATGATATTCCTGCCC
GTCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGG
GTTGGTGGCTCCAATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCT
CCCAAATCATAGCAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAA
CCAAAGAAAGGCTTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGG
GCGGACCACAGTCATAAGCTTCAAACCCTTCAAGGAGAAACCCTCCTTCT
CAAATCTGATGATGATTTCACCAACAAGGCCTCTTTGGACCC
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