CF835154

Overview
NameCF835154
Unique NameCF835154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_PHEZH (Nucleoside diphosphate kinase OS=Phenylobacterium zucineum (strain HLK1) GN=ndk PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 55/123 (44.72%), Postives = 75/123 (60.98%), Query Frame = -3
Query:  319 QRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 687
            +R L G++    E  G  +   K + + R  AEK YE    +PFFG L+E++TS PVV  + EGE  V   R ++GATNPAQ+A GTIR   A   G N +HGSDS+E+A+ EIA +F +  I
Sbjct:   15 RRNLTGKVNAVIEDAGLRIVAQKRIRMSRAQAEKFYEVHKERPFFGELVEFMTSAPVVVQVLEGENAVARYREVMGATNPAQAADGTIRKLYAESVGENSVHGSDSLENAKIEIAQFFTEDEI 137          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_PERMH (Nucleoside diphosphate kinase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=ndk PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 50/119 (42.02%), Postives = 75/119 (63.03%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V+R L G+II   +++GF L  LK + + +  A++ Y     +PF+  L E+++SGP+VAM+WEGE  +   R I+GATNP ++  GT+R       G N +HGSDS ESA+ EI  +F
Sbjct:   15 VRRNLEGKIIAHVQEKGFKLVALKKLKLTKEQAQQFYIVHKDRPFYDELCEFMSSGPIVAMVWEGENAISRIREIMGATNPEEAEEGTLRKLYGTNVGENAVHGSDSPESAKVEIPFFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_HELHP (Nucleoside diphosphate kinase OS=Helicobacter hepaticus GN=ndk PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V++G++G+II RFE     +  +K + + R  AE  Y     +PFF  L++++ SGPVV M+ EG   V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EIA +F
Sbjct:   13 VKKGVIGKIIDRFESNNLRICAMKKLQLTRCDAEAFYAIHKERPFFKDLVDFMISGPVVVMVLEGNNAVMKNRDLMGATNPKEAEAGTIRADFAQSIDANAVHGSDSLENAKNEIAFFF 131          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_CHLAB (Nucleoside diphosphate kinase OS=Chlamydophila abortus GN=ndk PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 53/119 (44.54%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V +  +GEII  FEK GF +  +K++ +    AE  Y    S+PFF  L++++ SGPVV M+ EG   V   R I+GATNP ++APGTIR       G N +HGSDS+E+A  EI  +F
Sbjct:   13 VGKAHIGEIIAIFEKSGFRIAAMKMLHLSVKEAEGFYAVHKSRPFFQELVDFMISGPVVVMVLEGNNAVARNREIMGATNPQEAAPGTIRAQFGESIGINAVHGSDSLENAAIEINYFF 131          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_AGRT5 (Nucleoside diphosphate kinase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ndk PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 53/123 (43.09%), Postives = 72/123 (58.54%), Query Frame = -3
Query:  319 QRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 687
            +R L G I   FE  G  +   K + + +  AE  Y     +PFFG L+E +TSGP +  + EGE  +   R I+GATNPAQ+A GTIR   A+  G N +HGSD+ E+A +EIA WF +  I
Sbjct:   16 KRNLTGAITKVFEDNGLRIVASKRVWMSKREAEGFYAVHKERPFFGELVEGMTSGPTIVQVLEGENAILKNREIMGATNPAQAAEGTIRKSFALSIGENSVHGSDAPETAAQEIAYWFAETEI 138          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK2_PARUW (Nucleoside diphosphate kinase 2 OS=Protochlamydia amoebophila (strain UWE25) GN=ndk2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = -3
Query:  334 VGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 675
            +GEII RFEK G  +   K+  + R  AE  Y     +PFF  L+ ++T+GPV+ M+ EGE  +   R I+GAT+P ++APGTIR D A     N +HGSD+ E+A+ EI  +F
Sbjct:   20 IGEIIARFEKAGLRIVAAKMKQLDRKDAEGFYAVHKGRPFFEDLVGFMTTGPVMIMVLEGENAINKNREIMGATDPKKAAPGTIRADFAQTIDENAVHGSDAAETAKTEIEYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_XANOR (Nucleoside diphosphate kinase OS=Xanthomonas oryzae pv. oryzae GN=ndk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21
Identity = 53/119 (44.54%), Postives = 70/119 (58.82%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V + ++GEI  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:   15 VAKNVIGEIYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_XANOM (Nucleoside diphosphate kinase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=ndk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21
Identity = 53/119 (44.54%), Postives = 70/119 (58.82%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V + ++GEI  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:   15 VAKNVIGEIYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_XANCP (Nucleoside diphosphate kinase OS=Xanthomonas campestris pv. campestris GN=ndk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21
Identity = 53/119 (44.54%), Postives = 70/119 (58.82%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V + ++GEI  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:   15 VAKNVIGEIYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_XANCB (Nucleoside diphosphate kinase OS=Xanthomonas campestris pv. campestris (strain B100) GN=ndk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21
Identity = 53/119 (44.54%), Postives = 70/119 (58.82%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V + ++GEI  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:   15 VAKNVIGEIYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
The following BLAST results are available for this feature:
BLAST of CF835154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PHEZH1.354e-2144.72Nucleoside diphosphate kinase OS=Phenylobacterium ... [more]
NDK_PERMH1.354e-2142.02Nucleoside diphosphate kinase OS=Persephonella mar... [more]
NDK_HELHP1.354e-2142.02Nucleoside diphosphate kinase OS=Helicobacter hepa... [more]
NDK_CHLAB1.354e-2144.54Nucleoside diphosphate kinase OS=Chlamydophila abo... [more]
NDK_AGRT51.354e-2143.09Nucleoside diphosphate kinase OS=Agrobacterium tum... [more]
NDK2_PARUW1.354e-2143.86Nucleoside diphosphate kinase 2 OS=Protochlamydia ... [more]
NDK_XANOR1.769e-2144.54Nucleoside diphosphate kinase OS=Xanthomonas oryza... [more]
NDK_XANOM1.769e-2144.54Nucleoside diphosphate kinase OS=Xanthomonas oryza... [more]
NDK_XANCP1.769e-2144.54Nucleoside diphosphate kinase OS=Xanthomonas campe... [more]
NDK_XANCB1.769e-2144.54Nucleoside diphosphate kinase OS=Xanthomonas campe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835154 ID=CF835154; Name=CF835154; organism=Citrus sinensis; type=EST; length=692bp
CCCCCCANGGTTTTTTTTTTTTTTTACATAAAAAGTGCAACCATCATGTG
CTAACCCTTATCAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAA
TATTGTATATGGCAACCACAAGAATGAAAGCAGCCAACATAACCAGAGAT
TGGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAA
CCATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGA
ACAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTG
AAGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTT
CTTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATGATATTCCTGCCC
GTCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGG
GTTGGTGGCTCCAATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCT
CCCAAATCATAGCAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAA
CCAAAGAAAGGCTTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGG
GCGGACCACAGTCATAAGCTTCAAACCCTTCAAGGAGAAACCCTCCTTCT
CAAATCTGATGATGATTTCACCAACAAGGCCTCTTTGGACCC
back to top