CF835154

Overview
NameCF835154
Unique NameCF835154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_PSEU2 (Nucleoside diphosphate kinase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V + ++GEI  RFEK G  +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:   15 VAKNVIGEITTRFEKAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFADSIDANAVHGSDSEAAAAREISYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_PSESM (Nucleoside diphosphate kinase OS=Pseudomonas syringae pv. tomato GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V + ++GEI  RFEK G  +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:   15 VAKNVIGEITTRFEKAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFADSIDANAVHGSDSEAAAAREISYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_PSEPW (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain W619) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V + ++G+I  RFE+ G  +   K+  + +  AE  Y + S + FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   15 VAKNVIGKITTRFEEAGLKIVASKIKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_PSEPK (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain KT2440) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V + ++G+I  RFE+ G  +   K+  + +  AE  Y + S + FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   15 VAKNVIGKITTRFEEAGLKIVASKMKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIAKNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_PSEP1 (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V + ++G+I  RFE+ G  +   K+  + +  AE  Y + S + FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   15 VAKNVIGKITTRFEEAGLKIVASKMKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIAKNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_PSEF5 (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 49/119 (41.18%), Postives = 74/119 (62.18%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V + ++G+I+ RFE+ G  +   K+  + +  AE  Y + S + FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   15 VAKNVIGKIVSRFEEAGLRVVASKMKQLSKAEAEGFYAEHSERGFFGELVAFMTSGPVVVQVLEGENAIVRNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_PSE14 (Nucleoside diphosphate kinase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V + ++GEI  RFEK G  +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:   15 VAKNVIGEITTRFEKAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFADSIDANAVHGSDSEAAAAREISYFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_PARDP (Nucleoside diphosphate kinase OS=Paracoccus denitrificans (strain Pd 1222) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 49/118 (41.53%), Postives = 73/118 (61.86%), Query Frame = -3
Query:  334 QRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 687
            +R L G+I  +FE+ G  +   K + +    A + Y +   +PF+G L E++TS PVV  + EGEG +   R ++GATNPA +  GTIR + A+  G N +HGSDS E+A +EIA +F
Sbjct:   16 KRNLTGKINAKFEEAGLRIVAQKRIQLTLAQAGQFYAEHKERPFYGELTEFMTSEPVVVQVLEGEGAILKNREVMGATNPANADEGTIRKEFALSVGENSVHGSDSPEAAAREIAFFF 133          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_CHLFF (Nucleoside diphosphate kinase OS=Chlamydophila felis (strain Fe/C-56) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = -3
Query:  334 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 690
            V +  +GEI+  FEK GF +  +K++ +    AE  Y    S+PFF  L++++ SGPVV M+ EG+  V   R I+GATNP ++A GTIR       G N +HGSDS+E+A  EI+ +F
Sbjct:   13 VGKAHIGEIVAIFEKAGFRIAAMKMVHLSAKEAEGFYAVHKSRPFFQELVDFMISGPVVVMVLEGDNAVVRNREIMGATNPQEAAQGTIRAQFGESIGINAVHGSDSLENAAIEISYFF 131          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_ACIAC (Nucleoside diphosphate kinase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.146e-21
Identity = 46/120 (38.33%), Postives = 74/120 (61.67%), Query Frame = -3
Query:  331 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 690
            V + ++G+I  RFE  G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV+  + EGE  +   R ++GAT+P ++APGTIR D A     N +HGSD+ E+AQ E++ +FP
Sbjct:   15 VAKNVIGQIYARFEAAGLKIAAARMAHLSRQEAEQFYAVHKERPFFKDLVDFMISGPVMIQVLEGENAILKNRELMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAQVEVSFFFP 134          
The following BLAST results are available for this feature:
BLAST of CF835154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PSEU25.146e-2142.02Nucleoside diphosphate kinase OS=Pseudomonas syrin... [more]
NDK_PSESM5.146e-2142.02Nucleoside diphosphate kinase OS=Pseudomonas syrin... [more]
NDK_PSEPW5.146e-2141.18Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEPK5.146e-2141.18Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEP15.146e-2141.18Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEF55.146e-2141.18Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_PSE145.146e-2142.02Nucleoside diphosphate kinase OS=Pseudomonas syrin... [more]
NDK_PARDP5.146e-2141.53Nucleoside diphosphate kinase OS=Paracoccus denitr... [more]
NDK_CHLFF5.146e-2142.86Nucleoside diphosphate kinase OS=Chlamydophila fel... [more]
NDK_ACIAC5.146e-2138.33Nucleoside diphosphate kinase OS=Acidovorax avenae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835154 ID=CF835154; Name=CF835154; organism=Citrus sinensis; type=EST; length=692bp
CCCCCCANGGTTTTTTTTTTTTTTTACATAAAAAGTGCAACCATCATGTG
CTAACCCTTATCAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAA
TATTGTATATGGCAACCACAAGAATGAAAGCAGCCAACATAACCAGAGAT
TGGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAA
CCATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGA
ACAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTG
AAGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTT
CTTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATGATATTCCTGCCC
GTCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGG
GTTGGTGGCTCCAATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCT
CCCAAATCATAGCAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAA
CCAAAGAAAGGCTTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGG
GCGGACCACAGTCATAAGCTTCAAACCCTTCAAGGAGAAACCCTCCTTCT
CAAATCTGATGATGATTTCACCAACAAGGCCTCTTTGGACCC
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