CF835154

Overview
NameCF835154
Unique NameCF835154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:166..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_BACC1 (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 10987) GN=ndk PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.716e-38
Identity = 72/136 (52.94%), Postives = 100/136 (73.53%), Query Frame = -3
Query:  286 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 690
            VQR  +GEI+ RFEK+GF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EIA++F +   +++   ++ WIY
Sbjct:   13 VQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIAIFFKEEELVDYSKLMNEWIY 148          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_BREBN (Nucleoside diphosphate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ndk PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.547e-38
Identity = 73/135 (54.07%), Postives = 98/135 (72.59%), Query Frame = -3
Query:  289 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 690
            VQR L+GEI+ RFEK+G+ L G KLMTV R  AE+HY +   +PFFG L+++ITSGPV AM+W+G  V+ T R ++G TNP  +A GTIRGD A   G NIIHGSDS ESA++EI LWF  +  ++++ ++  WI
Sbjct:   13 VQRNLIGEIVSRFEKKGYQLVGAKLMTVSRELAEEHYAEHKERPFFGELVDFITSGPVFAMVWQGNNVITTARAMMGKTNPVDAASGTIRGDFATSVGMNIIHGSDSPESAEREIGLWFSAEEVLSFEKTIQRWI 147          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_BACCR (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ndk PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.547e-38
Identity = 72/136 (52.94%), Postives = 99/136 (72.79%), Query Frame = -3
Query:  286 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 690
            VQR  +GEI+ RFEK+GF L G KLM V    A +HY +   KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EIA++F +   +++   ++ WIY
Sbjct:   13 VQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHKEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIAIFFKEEELVDYSKLMNEWIY 148          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_BACSU (Nucleoside diphosphate kinase OS=Bacillus subtilis GN=ndk PE=1 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 7.903e-38
Identity = 73/136 (53.68%), Postives = 99/136 (72.79%), Query Frame = -3
Query:  286 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 690
            VQR L+G+I+ RFE++G  L G KLM V    AEKHY +   KPFFG L+E+ITSGPV AM+WEGE V++  R +IG TNP ++ PGTIRGD  +  G+NIIHGSDS+ESA++EI ++F +   +++Q  +  WIY
Sbjct:   14 VQRQLIGDILSRFERKGLQLAGAKLMRVTEQMAEKHYAEHQGKPFFGELVEFITSGPVFAMVWEGENVIEVTRQLIGKTNPKEALPGTIRGDYGMFVGKNIIHGSDSLESAEREINIFFKNEELVSYQQLMAGWIY 149          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_BACHK (Nucleoside diphosphate kinase OS=Bacillus thuringiensis subsp. konkukian GN=ndk PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.903e-38
Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = -3
Query:  286 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 690
            VQR  +GEI+ RFEK+GF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:   13 VQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_BACCZ (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ZK / E33L) GN=ndk PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.903e-38
Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = -3
Query:  286 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 690
            VQR  +GEI+ RFEK+GF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:   13 VQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_BACAN (Nucleoside diphosphate kinase OS=Bacillus anthracis GN=ndk PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.903e-38
Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = -3
Query:  286 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 690
            VQR  +GEI+ RFEK+GF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:   13 VQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_STAHJ (Nucleoside diphosphate kinase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ndk PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.032e-37
Identity = 75/137 (54.74%), Postives = 99/137 (72.26%), Query Frame = -3
Query:  283 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 690
            +QR LVGEII R E++G  L G KLMTV +  AE+HY + + KPF+G LI +ITS PV AM+ EGE  V   R IIG TNP+++ PG+IRGDL +  GRN+IHGSDSVESAQ+EI LWF +  + ++++    W+YE
Sbjct:   13 IQRNLVGEIISRIERKGLKLVGAKLMTVPQALAEEHYSEHTDKPFYGKLISFITSAPVFAMVVEGEDAVDVSRHIIGKTNPSEATPGSIRGDLGLTVGRNVIHGSDSVESAQREINLWFKEEELSSYEAPRDTWLYE 149          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_BACHD (Nucleoside diphosphate kinase OS=Bacillus halodurans GN=ndk PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.348e-37
Identity = 72/135 (53.33%), Postives = 98/135 (72.59%), Query Frame = -3
Query:  289 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWI 690
            VQR L+GEI+ RFEK+GF+L G KLMTV +  AE HY +   +PFFG L+++ITSGPV AM+WEGE V+ T R ++GATNPA + PGTIRGD  +    N+IHGSDS ESA++EI ++F    +N +   ++ W+
Sbjct:   13 VQRNLIGEIVSRFEKKGFTLIGAKLMTVTKEQAETHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGATNPADAEPGTIRGDFGVQVAMNVIHGSDSPESAKREIDIFFDSSELNEYDKVVNRWV 147          
BLAST of CF835154 vs. ExPASy Swiss-Prot
Match: NDK_SCHPO (Nucleoside diphosphate kinase OS=Schizosaccharomyces pombe GN=ndk1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.761e-37
Identity = 73/137 (53.28%), Postives = 95/137 (69.34%), Query Frame = -3
Query:  283 VQRGLVGEIIIRFEKEGFSLKGLKLMTVVRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 690
            VQRGL+G II +FE +G+ L+ LK +   R   E+HY +   KPF+  L+ ++ SGPV AMIWEG+  VKTGR ++GA+NP  SAPGTIRGD  I  GRN+ HGSDS+ESA +EI LWF    I  +  ++ PWIYE
Sbjct:   15 VQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLVGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIESANREIKLWFQPSEIQVYDRTIEPWIYE 151          
The following BLAST results are available for this feature:
BLAST of CF835154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BACC12.716e-3852.94Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BREBN3.547e-3854.07Nucleoside diphosphate kinase OS=Brevibacillus bre... [more]
NDK_BACCR3.547e-3852.94Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACSU7.903e-3853.68Nucleoside diphosphate kinase OS=Bacillus subtilis... [more]
NDK_BACHK7.903e-3852.21Nucleoside diphosphate kinase OS=Bacillus thuringi... [more]
NDK_BACCZ7.903e-3852.21Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACAN7.903e-3852.21Nucleoside diphosphate kinase OS=Bacillus anthraci... [more]
NDK_STAHJ1.032e-3754.74Nucleoside diphosphate kinase OS=Staphylococcus ha... [more]
NDK_BACHD1.348e-3753.33Nucleoside diphosphate kinase OS=Bacillus halodura... [more]
NDK_SCHPO1.761e-3753.28Nucleoside diphosphate kinase OS=Schizosaccharomyc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835154 ID=CF835154; Name=CF835154; organism=Citrus sinensis; type=EST; length=692bp
CCCCCCANGGTTTTTTTTTTTTTTTACATAAAAAGTGCAACCATCATGTG
CTAACCCTTATCAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAA
TATTGTATATGGCAACCACAAGAATGAAAGCAGCCAACATAACCAGAGAT
TGGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAA
CCATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGA
ACAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTG
AAGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTT
CTTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATGATATTCCTGCCC
GTCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGG
GTTGGTGGCTCCAATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCT
CCCAAATCATAGCAACAACAGGACCAGAGGTAATGTACTCAATCAGAGAA
CCAAAGAAAGGCTTCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGG
GCGGACCACAGTCATAAGCTTCAAACCCTTCAAGGAGAAACCCTCCTTCT
CAAATCTGATGATGATTTCACCAACAAGGCCTCTTTGGACCC
back to top