CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK3_ARATH (Nucleoside diphosphate kinase III, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDPK3 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.908e-28
Identity = 55/97 (56.70%), Postives = 74/97 (76.29%), Query Frame = 3
Query:   51 EMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            EME+TFI IKPDGVQRGL+ EII  FE+KGF L G+K++   + FA KHY DL  +PFF    ++++SGPV+AM+ EG+GV+  GR +IGAT+P +S
Sbjct:   87 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKERPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKS 183          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.908e-28
Identity = 58/100 (58.00%), Postives = 78/100 (78.00%), Query Frame = 3
Query:   42 NLKEMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +++++E+T+IM+KPDG+QRGLVGEII  FEKKGF L GLK+    +  A++HY+DLS+K FF + IEYITSGPVV M  EG GVV + R +IG T+P Q+
Sbjct:   79 SMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQA 178          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_MACCJ (Nucleoside diphosphate kinase OS=Macrococcus caseolyticus (strain JCSC5402) GN=ndk PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.705e-28
Identity = 58/97 (59.79%), Postives = 71/97 (73.20%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+MIKPDGV RGL+GEI+   E KG  + G KLMTV    A  HY + S KPFFG  +E+ITSGPV AM+ EG+ VV  GRT++G TNPA+SA
Sbjct:    1 MEKTFLMIKPDGVGRGLIGEIVKRIENKGIKVVGAKLMTVSEDLAKTHYGEHSEKPFFGELVEFITSGPVFAMVLEGDNVVEIGRTLVGKTNPAESA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_CARHZ (Nucleoside diphosphate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=ndk PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.705e-28
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TFIM+KPDGVQRGLVGEII  FEK+GF L GLKLM + R  A+ HY +   KPFF   + +ITSGPVVAM+ EG+ V+ T R ++GATNP ++
Sbjct:    1 MERTFIMVKPDGVQRGLVGEIISRFEKRGFKLVGLKLMQISRELAETHYGEHKGKPFFEGLLNFITSGPVVAMVWEGKEVIATAREMMGATNPLKA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BACHD (Nucleoside diphosphate kinase OS=Bacillus halodurans GN=ndk PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.705e-28
Identity = 56/96 (58.33%), Postives = 74/96 (77.08%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+T++MIKPDGVQR L+GEI+  FEKKGF+L G KLMTV +  A+ HY +   +PFFG  +++ITSGPV AM+ EGE V+ T R ++GATNPA +
Sbjct:    1 MERTYLMIKPDGVQRNLIGEIVSRFEKKGFTLIGAKLMTVTKEQAETHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGATNPADA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.705e-28
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 3
Query:   42 NLKEMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +L++++Q +IM+KPDGVQRGLVGEII  FEKKGF L GLKL    +  A++HY+ L+ K FF   IEYITSGPVV+M  EG GVV + R +IGAT+P Q+
Sbjct:   78 SLEQVDQAYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKHLNQKSFFPKLIEYITSGPVVSMAWEGVGVVPSARKLIGATDPLQA 177          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_NOSP7 (Nucleoside diphosphate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.137e-27
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TF+ IKPDGVQRGLVGEII  FE KGF+L GLK + V +  A++HY     +PFFGS +E+ITS PVVAM+ EG+GVV + R IIGATNP  S
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLKVSKELAEQHYGVHRERPFFGSLVEFITSSPVVAMVWEGDGVVASARKIIGATNPLTS 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_HELMI (Nucleoside diphosphate kinase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.137e-27
Identity = 57/97 (58.76%), Postives = 74/97 (76.29%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+T++MIKPDGVQRGLVGEII  FEKKGF L G+K + + R  A+KHY +   KPFF   ++YI SGPVVAM  EG+ +V+  R ++GATNPA++A
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIISRFEKKGFKLVGMKFLRLTREMAEKHYAEHVGKPFFAGLVDYIISGPVVAMCWEGKDIVSVSREMMGATNPAKAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_CYAP4 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.137e-27
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TF+ +KPDGVQR LVGEII  FE KGF L GLKLM V +  A++HY +   KPFF   +++ITSGPVVAM+ EG+GVV + R IIGATNP  S
Sbjct:    1 MERTFLAVKPDGVQRALVGEIIRRFEAKGFKLVGLKLMNVSKDLAEQHYGEHKEKPFFPGLVQFITSGPVVAMVWEGKGVVASARKIIGATNPLNS 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK4_SPIOL (Nucleoside diphosphate kinase 4, chloroplastic OS=Spinacia oleracea GN=NDK4 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.137e-27
Identity = 55/97 (56.70%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   51 EMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E E+TFI IKPDGVQRGL+ EI+  FE+KGF L  +K++   + FA KHY DLS +PFF    ++++SGPVVAM+ EGEGV+  GR +IGAT+P +S
Sbjct:   84 EFERTFIAIKPDGVQRGLISEIVARFERKGFKLVAIKVVIPSKDFAQKHYHDLSERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKS 180          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK3_ARATH3.908e-2856.70Nucleoside diphosphate kinase III, chloroplastic/m... [more]
NDK2_ARATH3.908e-2858.00Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK_MACCJ8.705e-2859.79Nucleoside diphosphate kinase OS=Macrococcus caseo... [more]
NDK_CARHZ8.705e-2860.42Nucleoside diphosphate kinase OS=Carboxydothermus ... [more]
NDK_BACHD8.705e-2858.33Nucleoside diphosphate kinase OS=Bacillus halodura... [more]
NDK2_PEA8.705e-2859.00Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_NOSP71.137e-2762.50Nucleoside diphosphate kinase OS=Nostoc punctiform... [more]
NDK_HELMI1.137e-2758.76Nucleoside diphosphate kinase OS=Heliobacterium mo... [more]
NDK_CYAP41.137e-2761.46Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK4_SPIOL1.137e-2756.70Nucleoside diphosphate kinase 4, chloroplastic OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
back to top