CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:79..424. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_MICAN (Nucleoside diphosphate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.643e-27
Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            ME+TF+MIKPDGVQR LVGEII  FE KGF+L GLK+M V    A+KHY     +PFF S +++ITS PVVAM+ +GEGV+ + R IIGATNP
Sbjct:    1 MERTFLMIKPDGVQRNLVGEIIQRFETKGFTLVGLKMMQVSSELAEKHYAVHKERPFFRSLVDFITSSPVVAMVWQGEGVIASARKIIGATNP 93          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_THEEB (Nucleoside diphosphate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.369e-27
Identity = 57/93 (61.29%), Postives = 70/93 (75.27%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            ME+TF+ IKPDGVQRGLVG II  FE+KG++L GLKLM V R  A++HY +   KPFF   + +ITSGPVVAM+ EG GV+   R +IGATNP
Sbjct:    1 MERTFLAIKPDGVQRGLVGTIIQRFEQKGYTLVGLKLMRVSRELAEQHYGEHKDKPFFPGLVNFITSGPVVAMVWEGRGVIANARKLIGATNP 93          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SYNP2 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.369e-27
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TF+M+KPDGVQRGLVG++I  FE KGF L GLKL++V R  A++HY     +PFFGS +E+I S PVVAM+ EG+G +   R IIGATNP ++
Sbjct:    1 MERTFVMVKPDGVQRGLVGDVIRRFEAKGFKLVGLKLVSVSRELAEQHYGVHRERPFFGSLVEFIISVPVVAMVWEGKGAIAAARKIIGATNPLEA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BACHK (Nucleoside diphosphate kinase OS=Bacillus thuringiensis subsp. konkukian GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.369e-27
Identity = 54/97 (55.67%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+M+KPDGVQR  +GEI+  FEKKGF L G KLM V    A +HY + + KPFFG  +++ITSGPV AM+ +GEGVV+T R ++G T P ++A
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BACCZ (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ZK / E33L) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.369e-27
Identity = 54/97 (55.67%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+M+KPDGVQR  +GEI+  FEKKGF L G KLM V    A +HY + + KPFFG  +++ITSGPV AM+ +GEGVV+T R ++G T P ++A
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BACC1 (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 10987) GN=ndk PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 7.369e-27
Identity = 54/97 (55.67%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+M+KPDGVQR  +GEI+  FEKKGF L G KLM V    A +HY + + KPFFG  +++ITSGPV AM+ +GEGVV+T R ++G T P ++A
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BACAN (Nucleoside diphosphate kinase OS=Bacillus anthracis GN=ndk PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.369e-27
Identity = 54/97 (55.67%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+M+KPDGVQR  +GEI+  FEKKGF L G KLM V    A +HY + + KPFFG  +++ITSGPV AM+ +GEGVV+T R ++G T P ++A
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_GLOVI (Nucleoside diphosphate kinase OS=Gloeobacter violaceus GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.625e-27
Identity = 57/96 (59.38%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TFI IKPDGVQRGLVGEI+  FE++GF L GLKLM V    A KHY +   +PFFG  + +ITS PVVA++ EG+GVV T R ++G TNP  S
Sbjct:    1 MERTFIAIKPDGVQRGLVGEILQRFERRGFKLVGLKLMQVSEALAQKHYAEHKERPFFGGLVAFITSSPVVAVVLEGKGVVATARAMMGVTNPLNS 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BACCR (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.625e-27
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+M+KPDGVQR  +GEI+  FEKKGF L G KLM V    A +HY +   KPFFG  +++ITSGPV AM+ +GEGVV+T R ++G T P ++A
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHKEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BACSU (Nucleoside diphosphate kinase OS=Bacillus subtilis GN=ndk PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 2.144e-26
Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TFIM+KPDGVQR L+G+I+  FE+KG  L G KLM V    A+KHY +   KPFFG  +E+ITSGPV AM+ EGE V+   R +IG TNP ++
Sbjct:    2 MEKTFIMVKPDGVQRQLIGDILSRFERKGLQLAGAKLMRVTEQMAEKHYAEHQGKPFFGELVEFITSGPVFAMVWEGENVIEVTRQLIGKTNPKEA 97          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_MICAN5.643e-2762.37Nucleoside diphosphate kinase OS=Microcystis aerug... [more]
NDK_THEEB7.369e-2761.29Nucleoside diphosphate kinase OS=Thermosynechococc... [more]
NDK_SYNP27.369e-2758.33Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_BACHK7.369e-2755.67Nucleoside diphosphate kinase OS=Bacillus thuringi... [more]
NDK_BACCZ7.369e-2755.67Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACC17.369e-2755.67Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACAN7.369e-2755.67Nucleoside diphosphate kinase OS=Bacillus anthraci... [more]
NDK_GLOVI9.625e-2759.38Nucleoside diphosphate kinase OS=Gloeobacter viola... [more]
NDK_BACCR9.625e-2755.67Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACSU2.144e-2656.25Nucleoside diphosphate kinase OS=Bacillus subtilis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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