CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_HAEIG (Nucleoside diphosphate kinase OS=Haemophilus influenzae (strain PittGG) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            E+TF +IKPD V+R L+G I+  FE+ GF +   K++ + R  A+  Y +   K FF   +EY+ S P+V  + E E  V   RT+IG TNP
Sbjct:    3 ERTFSIIKPDAVKRNLIGAILTRFEQNGFKIIASKMVRLTREQAEGFYAEHQGKEFFAPLVEYMMSSPIVVSVLEKENAVKDYRTLIGTTNP 94          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_HAEIE (Nucleoside diphosphate kinase OS=Haemophilus influenzae (strain PittEE) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNP 332
            E+TF +IKPD V+R L+G I+  FE+ GF +   K++ + R  A+  Y +   K FF   +EY+ S P+V  + E E  V   RT+IG TNP
Sbjct:    3 ERTFSIIKPDAVKRNLIGAILTRFEQNGFKIIASKMVRLTREQAEGFYAEHQGKEFFAPLVEYMMSSPIVVSVLEKENAVKDYRTLIGTTNP 94          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_GEOLS (Nucleoside diphosphate kinase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TF +IKPD V+RGL G+II   E+ GF++ G+K + + R  A+  Y     +PFF     +++  PV+ M  + E  +   RT++GATNPA +
Sbjct:    1 MERTFAIIKPDAVERGLSGKIITKIEEAGFAIVGMKKIHLSRAQAEGFYYVHKERPFFNDLCSFMSRSPVIVMCLQKENAIADWRTLMGATNPANA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ENTS8 (Nucleoside diphosphate kinase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF +IKP+ V + ++G I   FE  GF + G K++ +    A   Y +   KPFF   +E++TSGP+V  + E E  V   R ++GATNPA +
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFARFESAGFKIIGTKMLHLTVEQARGFYAEHEGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_DESDG (Nucleoside diphosphate kinase OS=Desulfovibrio desulfuricans (strain G20) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            E+TF +IKPD  +R L G I+   ++ G  +  +K M + R  A+  Y     +PFF S  +++TSGP+VAM+ EG+  V   R ++GATNP  +A
Sbjct:    3 ERTFAIIKPDATRRNLEGPILSVIQQNGLRVVAMKKMRLTREQAEGFYHVHKERPFFASLTDFMTSGPIVAMVLEGDNAVARWRELMGATNPENAA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_DESDA (Nucleoside diphosphate kinase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            M+ TF +IKPD V R L GEI+   E  G  +  LK + + +  A   Y     +PFF S  +Y++SGPVV ++  GE  V   R ++GATNPAQ+
Sbjct:    2 MQSTFAIIKPDAVSRQLTGEILAAMEASGLKIVALKRLHLSKAQAAGFYAVHRERPFFDSLTDYMSSGPVVCVVLRGEDAVPRWRALMGATNPAQA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_CITK8 (Nucleoside diphosphate kinase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF +IKP+ V + ++G I   FE  GF + G K++ +    A   Y +   KPFF   +E++TSGP+V  + E E  V   R ++GATNPA +
Sbjct:    3 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK1_PARUW (Nucleoside diphosphate kinase 1 OS=Protochlamydia amoebophila (strain UWE25) GN=ndk1 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.451e-15
Identity = 36/95 (37.89%), Postives = 57/95 (60.00%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            EQT  +IKPD VQ   +GEII  FE+ G  +  +K+ T+ +  A K Y     +PF+   + +++SGPVV M+ EG   +   R ++GAT+P ++
Sbjct:    4 EQTLSIIKPDAVQNNYIGEIISRFEQAGLKIAAIKMTTLTKDQASKFYAIHKDRPFYNDLVNFMSSGPVVVMVLEGNQAIAKNRELMGATDPKKA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PSEPW (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain W619) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 35/97 (36.08%), Postives = 60/97 (61.86%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +++TF +IKPD V + ++G+I   FE+ G  +   K+  + +  A+  Y + S + FFG  + ++TSGPVV  + EGE  +   R ++GATNP ++A
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKITTRFEEAGLKIVASKIKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIALNRELMGATNPKEAA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PSEPK (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain KT2440) GN=ndk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 35/97 (36.08%), Postives = 60/97 (61.86%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +++TF +IKPD V + ++G+I   FE+ G  +   K+  + +  A+  Y + S + FFG  + ++TSGPVV  + EGE  +   R ++GATNP ++A
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKITTRFEEAGLKIVASKMKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIAKNRELMGATNPKEAA 99          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_HAEIG8.451e-1541.30Nucleoside diphosphate kinase OS=Haemophilus influ... [more]
NDK_HAEIE8.451e-1541.30Nucleoside diphosphate kinase OS=Haemophilus influ... [more]
NDK_GEOLS8.451e-1539.58Nucleoside diphosphate kinase OS=Geobacter lovleyi... [more]
NDK_ENTS88.451e-1538.54Nucleoside diphosphate kinase OS=Enterobacter saka... [more]
NDK_DESDG8.451e-1539.58Nucleoside diphosphate kinase OS=Desulfovibrio des... [more]
NDK_DESDA8.451e-1541.67Nucleoside diphosphate kinase OS=Desulfovibrio des... [more]
NDK_CITK88.451e-1538.54Nucleoside diphosphate kinase OS=Citrobacter koser... [more]
NDK1_PARUW8.451e-1537.89Nucleoside diphosphate kinase 1 OS=Protochlamydia ... [more]
NDK_PSEPW1.104e-1436.08Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEPK1.104e-1436.08Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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