CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKA_DROYA (Nucleoside diphosphate kinase (Fragment) OS=Drosophila yakuba GN=awd PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.144e-26
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFIM+KPDGVQRGLVG+II  FE+KGF L  LK     +   +KHY DLS++PFF   + Y+ SGPVV M+ EG  VV TGR ++GATNPA S
Sbjct:    3 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADS 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKA_DROME (Nucleoside diphosphate kinase OS=Drosophila melanogaster GN=awd PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 2.144e-26
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFIM+KPDGVQRGLVG+II  FE+KGF L  LK     +   +KHY DLS++PFF   + Y+ SGPVV M+ EG  VV TGR ++GATNPA S
Sbjct:    6 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADS 100          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_BACSK (Nucleoside diphosphate kinase OS=Bacillus clausii (strain KSM-K16) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.800e-26
Identity = 50/97 (51.55%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+T++M+KPDGVQR L+G I+  FE+KG++L   KL+T+ +  A+ HY +   +PFFG  + +ITSGPV AM+ EGEGV+   R +IGATNP+++A
Sbjct:    1 MERTYVMVKPDGVQRNLIGNIVSRFEQKGYTLAAAKLVTLSKETAETHYSEHRERPFFGELVSFITSGPVFAMVWEGEGVIKAARQLIGATNPSEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ARCFU (Nucleoside diphosphate kinase OS=Archaeoglobus fulgidus GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.800e-26
Identity = 51/97 (52.58%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+M+KPDGVQRGLVGE+I   E+KG  +  +K++ + R  A+ HY +   KPFF + ++YITSGPVVAM+ EG+  +   RT++GATNPA++A
Sbjct:    1 MERTFVMVKPDGVQRGLVGEVIGRLERKGLKIVAMKMLWIAREMAENHYAEHREKPFFSALVDYITSGPVVAMVVEGKNAIKVVRTLVGATNPAEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_ASPFU (Nucleoside diphosphate kinase OS=Aspergillus fumigatus GN=ndk1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.657e-26
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            EQTFI IKPDGVQRGL+G II  FE +GF L  +KL++  +   ++HY DLS KPFF   + Y+ SGP+ AM+ EG  VV TGRTI+GATNP  SA
Sbjct:    4 EQTFIAIKPDGVQRGLIGPIISRFENRGFKLVAMKLVSPPQSQLEQHYADLSDKPFFKGLVSYMLSGPICAMVWEGRDVVKTGRTILGATNPLASA 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKA_PONAB (Nucleoside diphosphate kinase A OS=Pongo abelii GN=NME1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.657e-26
Identity = 57/95 (60.00%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQRGLVGEII  FE+KGF L GLK M        +HY DL  +PFF   ++Y+ SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKA_HUMAN (Nucleoside diphosphate kinase A OS=Homo sapiens GN=NME1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.657e-26
Identity = 57/95 (60.00%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQRGLVGEII  FE+KGF L GLK M        +HY DL  +PFF   ++Y+ SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SYNS3 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9311) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.239e-26
Identity = 54/95 (56.84%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E++FI IKPDGVQRGLVGEI+  FE+KGF L GLK +T  R  A++HY     +PFFG  +++ITSGPVVAM+ EG+GV+ + R +IGAT P ++
Sbjct:    4 ERSFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFGGLVDFITSGPVVAMVWEGDGVITSARKMIGATKPLEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKC_DICDI (Nucleoside diphosphate kinase, cytosolic OS=Dictyostelium discoideum GN=ndkC-1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.239e-26
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 3
Query:   33 VSLNLKEMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            +S N    E+TF+ +KPDGV RGLVGEII  +EKKGF L GLK +   +  A+ HY +   +PFFG  + +ITSGPVVAM+ EG+GVV + R +IG TNP  SA
Sbjct:    1 MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA 104          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PELTS (Nucleoside diphosphate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.148e-26
Identity = 54/97 (55.67%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+T++MIKPDGVQRGLVGEII  FEK+GF + GLK++ + R  A+KHY +   KPFF   + YITS PVVAM+ EG+  V   R ++GAT+P ++A
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIIARFEKRGFKIVGLKMIRIGRELAEKHYGEHKGKPFFEPLVGYITSSPVVAMVIEGKNAVGAAREMMGATDPLKAA 97          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKA_DROYA2.144e-2658.95Nucleoside diphosphate kinase (Fragment) OS=Drosop... [more]
NDKA_DROME2.144e-2658.95Nucleoside diphosphate kinase OS=Drosophila melano... [more]
NDK_BACSK2.800e-2651.55Nucleoside diphosphate kinase OS=Bacillus clausii ... [more]
NDK_ARCFU2.800e-2652.58Nucleoside diphosphate kinase OS=Archaeoglobus ful... [more]
NDK_ASPFU3.657e-2658.33Nucleoside diphosphate kinase OS=Aspergillus fumig... [more]
NDKA_PONAB3.657e-2660.00Nucleoside diphosphate kinase A OS=Pongo abelii GN... [more]
NDKA_HUMAN3.657e-2660.00Nucleoside diphosphate kinase A OS=Homo sapiens GN... [more]
NDK_SYNS36.239e-2656.84Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDKC_DICDI6.239e-2653.85Nucleoside diphosphate kinase, cytosolic OS=Dictyo... [more]
NDK_PELTS8.148e-2655.67Nucleoside diphosphate kinase OS=Pelotomaculum the... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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