CF835155

Overview
NameCF835155
Unique NameCF835155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.537e-24
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF+ IKPDGVQRGLVGEI+  FE+KGF L GLK +   R  A +HY     +PFF   +++ITSGPVVAM+ EG+GV+ + R +IGAT P ++
Sbjct:    3 VERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLAPSRELAGEHYGVHRERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_SYNJB (Nucleoside diphosphate kinase OS=Synechococcus sp. GN=ndk PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.007e-24
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            ME+TFI IKPDGVQRGLVG II   E +G+ L GLKL+ V +  A+ HY +   +PFF S +++ITSGPVVAM+ +G+GV+   R +IG TNP ++
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHKERPFFHSLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLEA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_GINCI (Nucleoside diphosphate kinase (Fragment) OS=Ginglymostoma cirratum PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.007e-24
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI +KPDGVQR +VGE+I  FE+KGF L  +K +   +   +KHY +LS KPF+   I+Y++SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    4 ERTFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPVVAMVWEGLNVVKTGRVMLGETNPADS 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDKA_CANFA (Nucleoside diphosphate kinase A OS=Canis familiaris GN=NME1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.007e-24
Identity = 54/95 (56.84%), Postives = 66/95 (69.47%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQR LVGEII  FE+KGF L  +KL+        +HY DL  +PFF   ++Y+ SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    5 ERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFFAGLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_EXIS2 (Nucleoside diphosphate kinase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=ndk PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.423e-24
Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            MEQTF+M+KPDGV+RGL+GEII   E+KGF ++ +K+M V    A  HY + + KPFFG  + ++TSGPVVA+  EGE VV   R +IG T P ++
Sbjct:    1 MEQTFLMVKPDGVERGLIGEIIARIERKGFVIREMKMMQVTEELAQAHYAEHAEKPFFGELVTFLTSGPVVALRVEGEDVVTVSRMMIGKTKPTEA 96          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_CHICK (Nucleoside diphosphate kinase OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.423e-24
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQRGLVGEII  FE+KGF L  +K +        +HY DL  +PF+   ++Y+ SGPVVAM+ EG  VV TGR ++G TNPA S
Sbjct:    6 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFVHASEDLLKQHYIDLKDRPFYPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADS 100          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PROMA (Nucleoside diphosphate kinase OS=Prochlorococcus marinus GN=ndk PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.471e-24
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            +E+TF+ IKPDGVQRGLVGEI+  FE+KGF L GLK +   +  A+KHY     +PFF   + +ITSGPVVAM+ EG+GV+ + R +IGAT P ++
Sbjct:    3 VERTFLAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLIPSKELAEKHYGVHKERPFFTGLVGFITSGPVVAMVWEGDGVILSARKLIGATKPLEA 98          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_HALMA (Nucleoside diphosphate kinase OS=Haloarcula marismortui GN=ndk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.471e-24
Identity = 48/100 (48.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:   45 LKEMEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            + E E+TF+M+KPDGVQRGL+G+I+  FE +G  + G K M +D+  A++HY +   KPFF   +++ITSGPV AM+ EG+      RT++G T+PA+SA
Sbjct:    1 MSEHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKPFFDGLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESA 100          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_STACT (Nucleoside diphosphate kinase OS=Staphylococcus carnosus (strain TM300) GN=ndk PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.626e-24
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 3
Query:   54 MEQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQSA 344
            ME+TF+MIKPDGVQR LVGEII   EKKG  L G K MTV +  A+ HY + + KPF+   + +ITS PV AM+ EGE VV   R +IG TNP ++A
Sbjct:    1 MERTFLMIKPDGVQRKLVGEIITRLEKKGLKLVGGKFMTVSKEKAETHYGEHADKPFYEGLVSFITSAPVFAMVVEGENVVEVTRNMIGKTNPTEAA 97          
BLAST of CF835155 vs. ExPASy Swiss-Prot
Match: NDK_PROM9 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=ndk PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.626e-24
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   57 EQTFIMIKPDGVQRGLVGEIIITFEKKGFSLKGLKLMTVDRPFADKHYEDLSSKPFFGSQIEYITSGPVVAMIGEGEGVVNTGRTIIGATNPAQS 341
            E+TFI IKPDGVQRG V EII  FEKKGF L GLK +   +  A  HY     +PFFG  +++I+SGPVVAM+ EGEGV+ + R +IGAT P ++
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEA 98          
The following BLAST results are available for this feature:
BLAST of CF835155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PROM31.537e-2454.17Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SYNJB2.007e-2454.17Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_GINCI2.007e-2454.74Nucleoside diphosphate kinase (Fragment) OS=Gingly... [more]
NDKA_CANFA2.007e-2456.84Nucleoside diphosphate kinase A OS=Canis familiari... [more]
NDK_EXIS23.423e-2452.08Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]
NDK_CHICK3.423e-2455.79Nucleoside diphosphate kinase OS=Gallus gallus PE=... [more]
NDK_PROMA4.471e-2454.17Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_HALMA4.471e-2448.00Nucleoside diphosphate kinase OS=Haloarcula marism... [more]
NDK_STACT7.626e-2455.67Nucleoside diphosphate kinase OS=Staphylococcus ca... [more]
NDK_PROM97.626e-2455.79Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835155 ID=CF835155; Name=CF835155; organism=Citrus sinensis; type=EST; length=346bp
GTGATATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAA
GAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGG
CCTTGTTGGTGAAATCATCATCACATTTGAGAAGAAGGGTTTCTCCTTGA
AGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGACAAGCACTAT
GAGGATTTGTCATCGAAGCCTTTCTTTGGCTCTCAGATTGAGTACATTAC
CTCTGGACCTGTTGTTGCTATGATTGGGGAGGGTGAAGGTGTTGTTAACA
CTGGCCGCACTATTATTGGAGCCACCAACCCTGCACAATCTGCTCC
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