CF835156

Overview
NameCF835156
Unique NameCF835156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:153..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK1_PEA (Nucleoside diphosphate kinase 1 OS=Pisum sativum GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.133e-60
Identity = 111/141 (78.72%), Postives = 121/141 (85.82%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 692
            IKPDGVQRGLVGEII RFEKKGF LKGLK + V+R FAEKHY DLS+KPFF  L++YI SGPVVAMIWEG+ VV TGR IIGATNPAQS PGTIRGD AI  GRN+IHGSD+VESA KEIALWFP+G  NW+SSLH WIYE
Sbjct:    9 IKPDGVQRGLVGEIISRFEKKGFYLKGLKFVNVERAFAEKHYADLSAKPFFSGLVDYIISGPVVAMIWEGKNVVTTGRKIIGATNPAQSEPGTIRGDFAIDIGRNVIHGSDAVESANKEIALWFPEGAANWESSLHSWIYE 149          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK1_SACOF (Nucleoside diphosphate kinase 1 OS=Saccharum officinarum GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.121e-59
Identity = 107/141 (75.89%), Postives = 119/141 (84.40%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 692
            IKPDGVQRGL+GEII RFEKKGF LK LKL+ V+R FAEKHY DLSSKPFF  L++YI SGPVVAM+WEG+ VV TGR IIGATNP  S PGTIRGD A+  GRN+IHGSDS+ESA KEIALWFP+G  +WQSS HPWIYE
Sbjct:    8 IKPDGVQRGLIGEIISRFEKKGFYLKALKLVNVERSFAEKHYADLSSKPFFQGLVDYIISGPVVAMVWEGKSVVTTGRKIIGATNPLVSEPGTIRGDFAVDIGRNVIHGSDSIESANKEIALWFPEGLADWQSSQHPWIYE 148          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSJ (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. japonica GN=NDKR PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.434e-55
Identity = 98/141 (69.50%), Postives = 118/141 (83.69%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 692
            IKPDGVQRGL+G+II RFEKKGF L+G+K M V+R FA++HY DLS KPFF  L+EYI SGPVVAM+WEG+ VV TGR IIGAT P ++APGTIR D A+  GRN+IHGSDSV++ +KEIALWFP+G   W+S+LHPWIYE
Sbjct:    8 IKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPEGLAEWRSNLHPWIYE 148          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSI (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. indica GN=NDKR PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.434e-55
Identity = 98/141 (69.50%), Postives = 118/141 (83.69%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 692
            IKPDGVQRGL+G+II RFEKKGF L+G+K M V+R FA++HY DLS KPFF  L+EYI SGPVVAM+WEG+ VV TGR IIGAT P ++APGTIR D A+  GRN+IHGSDSV++ +KEIALWFP+G   W+S+LHPWIYE
Sbjct:    8 IKPDGVQRGLIGDIISRFEKKGFFLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPEGLAEWRSNLHPWIYE 148          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.781e-48
Identity = 91/142 (64.08%), Postives = 109/142 (76.76%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 692
            IKPDGVQRGLVGEII RFEKKGF L GLKL    +  AE+HY+DL SKPFF  LI+YITSGPVV M WEG GVV + R +IGATNP  + PGTIRGDLA+ TGRN++HGSDS ++ ++EIALWF +G + +W     PW+ E
Sbjct:   91 IKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATNPLNAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIALWFGEGELCSWTPVQEPWLIE 232          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_NOSP7 (Nucleoside diphosphate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndk PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.939e-48
Identity = 92/142 (64.79%), Postives = 110/142 (77.46%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 692
            IKPDGVQRGLVGEII RFE KGF+L GLK + V +  AE+HY     +PFFGSL+E+ITS PVVAM+WEG+GVV + R IIGATNP  S PGTIRGD  I  GRN+IHGSD+ E+AQ+EIALWF D   +NWQ  + PW++E
Sbjct:    8 IKPDGVQRGLVGEIIRRFETKGFTLVGLKFLKVSKELAEQHYGVHRERPFFGSLVEFITSSPVVAMVWEGDGVVASARKIIGATNPLTSEPGTIRGDFGINIGRNLIHGSDAPETAQQEIALWFKDEELVNWQPHITPWLHE 149          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_CYAP4 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndk PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.939e-48
Identity = 92/142 (64.79%), Postives = 110/142 (77.46%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 692
            +KPDGVQR LVGEII RFE KGF L GLKLM V +  AE+HY +   KPFF  L+++ITSGPVVAM+WEG+GVV + R IIGATNP  S PGTIRGD  +  GRNIIHGSD+VE+AQ+EIALWF P   ++W+ +L  WIYE
Sbjct:    8 VKPDGVQRALVGEIIRRFEAKGFKLVGLKLMNVSKDLAEQHYGEHKEKPFFPGLVQFITSGPVVAMVWEGKGVVASARKIIGATNPLNSEPGTIRGDYGVDIGRNIIHGSDAVETAQREIALWFQPAELVSWEPTLTSWIYE 149          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_ACAM1 (Nucleoside diphosphate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=ndk PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.450e-48
Identity = 92/142 (64.79%), Postives = 109/142 (76.76%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 692
            +KPDGVQRGLVGEII R+E KGF+L GLKLM V R  AE+HY +   KPFF  L+++ITSGPVVAM+WEG+GVV   R IIGATNP  S PGTIRGD  I  GRNIIHGSD+VE+AQ+EI+LWF    + +W  +L  WIYE
Sbjct:    8 VKPDGVQRGLVGEIISRYEAKGFTLVGLKLMVVSRELAEQHYGEHKEKPFFSGLVDFITSGPVVAMVWEGKGVVAAARKIIGATNPLGSEPGTIRGDFGIDIGRNIIHGSDAVETAQREISLWFKSEELADWSPTLTSWIYE 149          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_ASPFU (Nucleoside diphosphate kinase OS=Aspergillus fumigatus GN=ndk1 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.424e-48
Identity = 90/142 (63.38%), Postives = 110/142 (77.46%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 692
            IKPDGVQRGL+G II RFE +GF L  +KL++  +   E+HY DLS KPFF  L+ Y+ SGP+ AM+WEG  VVKTGRTI+GATNP  SAPGTIRGD AI  GRN+ HGSDSVE+A+KEIALWF P+  I+W+S+   W+YE
Sbjct:   10 IKPDGVQRGLIGPIISRFENRGFKLVAMKLVSPPQSQLEQHYADLSDKPFFKGLVSYMLSGPICAMVWEGRDVVKTGRTILGATNPLASAPGTIRGDFAIDVGRNVCHGSDSVENAKKEIALWFKPEELISWKSATFDWVYE 151          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_ANAVT (Nucleoside diphosphate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndk PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.424e-48
Identity = 90/142 (63.38%), Postives = 110/142 (77.46%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 692
            IKPDGVQRGLVGEII RFE KGF+L GLK + V +  AE+HY     +PFF SL+E+ITSGPVVAM+WEG+GV+ + R IIGATNP  + PGTIRGD  I  GRN+IHGSD+ E+AQKE++LWF D   +NWQ  L PW++E
Sbjct:    8 IKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNPLTAEPGTIRGDFGINIGRNLIHGSDAPETAQKEVSLWFTDAELVNWQPHLTPWLHE 149          
The following BLAST results are available for this feature:
BLAST of CF835156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK1_PEA1.133e-6078.72Nucleoside diphosphate kinase 1 OS=Pisum sativum G... [more]
NDK1_SACOF8.121e-5975.89Nucleoside diphosphate kinase 1 OS=Saccharum offic... [more]
NDK1_ORYSJ1.434e-5569.50Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK1_ORYSI1.434e-5569.50Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK2_TOBAC3.781e-4864.08Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_NOSP74.939e-4864.79Nucleoside diphosphate kinase OS=Nostoc punctiform... [more]
NDK_CYAP44.939e-4864.79Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK_ACAM16.450e-4864.79Nucleoside diphosphate kinase OS=Acaryochloris mar... [more]
NDK_ASPFU8.424e-4863.38Nucleoside diphosphate kinase OS=Aspergillus fumig... [more]
NDK_ANAVT8.424e-4863.38Nucleoside diphosphate kinase OS=Anabaena variabil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835156 ID=CF835156; Name=CF835156; organism=Citrus sinensis; type=EST; length=692bp
TTTTTTTTTTTTTTAACTAAAAAGTGCAACCATCATGTGCTAACCCTTTA
AAACTCAATTCATAATACAGTCAACAAAAAAGCTTACATATTGTATATGG
CAACCACAAGAATGAAAGCAGCCAACATAACCAGGATTGGTCTCAATTTA
ACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGGA
AATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTCC
TCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTGC
CAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCACT
CTCAACTGAGTCACTTCCATGGATGATATTCCTGCCCGTCACGATAGCCA
AATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCCA
ATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAGC
AACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGCT
TCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGTC
ATAAGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCTCAAATCTGATGAT
GATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGAT
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