CF835156

Overview
NameCF835156
Unique NameCF835156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_LISMO (Nucleoside diphosphate kinase OS=Listeria monocytogenes GN=ndk PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.051e-38
Identity = 77/140 (55.00%), Postives = 100/140 (71.43%), Query Frame = -1
Query:  276 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 692
            +KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSDS ESAQ+EI L+F PD  +++Q ++  WI
Sbjct:    8 VKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAQREIQLFFAPDEILSYQKAVDTWI 147          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_EXIS2 (Nucleoside diphosphate kinase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=ndk PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.761e-37
Identity = 71/130 (54.62%), Postives = 94/130 (72.31%), Query Frame = -1
Query:  303 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN 692
            +KPDGV+RGL+GEII R E+KGF ++ +K+M V    A+ HY + + KPFFG L+ ++TSGPVVA+  EGE VV   R +IG T P ++ PGTIRGD A     N+IHGSDSVESA++E+ LWF   P+N
Sbjct:    8 VKPDGVERGLIGEIIARIERKGFVIREMKMMQVTEELAQAHYAEHAEKPFFGELVTFLTSGPVVALRVEGEDVVTVSRMMIGKTKPTEALPGTIRGDFANTMSENVIHGSDSVESAERELGLWFQGQPLN 137          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_LISIN (Nucleoside diphosphate kinase OS=Listeria innocua GN=ndk PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.299e-37
Identity = 75/140 (53.57%), Postives = 102/140 (72.86%), Query Frame = -1
Query:  276 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 692
            +KPDGV+RGL+GEI+ + EKKG  L   KLM +DR  AE+HY +   KPFF  LI +ITSGPV AM+ EG+ V+KT R ++G TNP ++ PGTIR + AI T RN+IHGSDS ESA++EI L+F P   ++++ ++  WI
Sbjct:    8 VKPDGVERGLIGEIVAKIEKKGIKLVAGKLMQIDRTLAEQHYAEHIGKPFFEDLIGFITSGPVFAMVLEGDDVIKTARRMMGKTNPLEADPGTIRAEYAIHTNRNVIHGSDSPESAKREIQLFFEPHEILSYEKAVDTWI 147          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_LISMH (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=ndk PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.003e-37
Identity = 75/140 (53.57%), Postives = 100/140 (71.43%), Query Frame = -1
Query:  276 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 692
            +KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSDS+ESA++EI L+F P   +++Q ++  WI
Sbjct:    8 VKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSLESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_DESHY (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain Y51) GN=ndk PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.122e-37
Identity = 75/142 (52.82%), Postives = 101/142 (71.13%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 692
            +KPD VQRGLVG+II RFE KG  L G+KLM+VD+  AE+HY +   K FF   ++YI S PVVAM+WEG+ VV   R ++GATNPA + PG+IRG   +   RN+IHGSDSV SA++EIAL+F P+   +++ +   W+ E
Sbjct:    8 LKPDAVQRGLVGQIIARFETKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGKNVVALARELMGATNPANANPGSIRGSFGMDISRNVIHGSDSVASAEREIALYFRPEELCDYRKAGEEWLSE 149          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_DESHD (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=ndk PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.122e-37
Identity = 75/142 (52.82%), Postives = 101/142 (71.13%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 692
            +KPD VQRGLVG+II RFE KG  L G+KLM+VD+  AE+HY +   K FF   ++YI S PVVAM+WEG+ VV   R ++GATNPA + PG+IRG   +   RN+IHGSDSV SA++EIAL+F P+   +++ +   W+ E
Sbjct:    8 LKPDAVQRGLVGQIIARFEAKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGKNVVALARELMGATNPANANPGSIRGSFGMDISRNVIHGSDSVASAEREIALYFRPEELCDYRKAGEEWLSE 149          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_METKA (Nucleoside diphosphate kinase OS=Methanopyrus kandleri GN=ndk PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.690e-37
Identity = 78/143 (54.55%), Postives = 100/143 (69.93%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD--GPINWQSSLHPWIYE 692
            IKPDGV RGLVGE+I R E+KG  +  L++  +DR  AEK YE+   KPFF  LIEY+TSGPVV MI EG   VK  R IIGAT+PA++APGT+RGD A+  GRN++H SDS ESA++EI + F      I+++     W+YE
Sbjct:   11 IKPDGVVRGLVGEVIRRLERKGLKIVALEMRQLDRETAEKLYEEHRDKPFFEDLIEYVTSGPVVVMIVEGRKAVKVVRNIIGATDPAEAAPGTVRGDFALDIGRNVVHASDSPESAEREIEIVFGKDLSTIDYERCDEEWLYE 153          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_LISMF (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=ndk PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.690e-37
Identity = 75/140 (53.57%), Postives = 99/140 (70.71%), Query Frame = -1
Query:  276 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 692
            +KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSDS ESA++EI L+F P   +++Q ++  WI
Sbjct:    8 VKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_LISMC (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=ndk PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.738e-37
Identity = 74/140 (52.86%), Postives = 99/140 (70.71%), Query Frame = -1
Query:  276 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 692
            +KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D A+ T RN+IHGSDS ESA++EI L+F P   +++Q ++  WI
Sbjct:    8 VKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAVHTNRNVIHGSDSPESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDKM_MOUSE (Nucleoside diphosphate kinase, mitochondrial OS=Mus musculus GN=Nme4 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.738e-37
Identity = 71/137 (51.82%), Postives = 94/137 (68.61%), Query Frame = -1
Query:  285 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLH 692
            +KPDGVQR LVG +I RFE++GF L G+K++        +HY DL  KPF+ +LI Y++SGPVVAM+WEG  VV   R +IG T+  ++APGTIRGD ++   RN+IH SDSV+ AQ+EI LWF     +NW    H
Sbjct:   43 VKPDGVQRRLVGTVIQRFERRGFKLVGMKMLQAPESILAEHYRDLQRKPFYPALISYMSSGPVVAMVWEGPNVVHISRAMIGHTDSTEAAPGTIRGDFSVHISRNVIHASDSVDGAQREIELWFQSSELLNWADGGH 179          
The following BLAST results are available for this feature:
BLAST of CF835156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_LISMO6.051e-3855.00Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_EXIS21.761e-3754.62Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]
NDK_LISIN2.299e-3753.57Nucleoside diphosphate kinase OS=Listeria innocua ... [more]
NDK_LISMH3.003e-3753.57Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_DESHY5.122e-3752.82Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDK_DESHD5.122e-3752.82Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDK_METKA6.690e-3754.55Nucleoside diphosphate kinase OS=Methanopyrus kand... [more]
NDK_LISMF6.690e-3753.57Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_LISMC8.738e-3752.86Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDKM_MOUSE8.738e-3751.82Nucleoside diphosphate kinase, mitochondrial OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835156 ID=CF835156; Name=CF835156; organism=Citrus sinensis; type=EST; length=692bp
TTTTTTTTTTTTTTAACTAAAAAGTGCAACCATCATGTGCTAACCCTTTA
AAACTCAATTCATAATACAGTCAACAAAAAAGCTTACATATTGTATATGG
CAACCACAAGAATGAAAGCAGCCAACATAACCAGGATTGGTCTCAATTTA
ACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGGA
AATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTCC
TCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTGC
CAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCACT
CTCAACTGAGTCACTTCCATGGATGATATTCCTGCCCGTCACGATAGCCA
AATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCCA
ATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAGC
AACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGCT
TCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGTC
ATAAGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCTCAAATCTGATGAT
GATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGAT
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