CF835156

Overview
NameCF835156
Unique NameCF835156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_ECO45 (Nucleoside diphosphate kinase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 57/129 (44.19%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + EGE  V+  R ++GATNPA +  GT+R D A     N  HGSDSVESA +EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEV 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_ECO27 (Nucleoside diphosphate kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 57/129 (44.19%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + EGE  V+  R ++GATNPA +  GT+R D A     N  HGSDSVESA +EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFETAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEV 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_ECO24 (Nucleoside diphosphate kinase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 57/129 (44.19%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + EGE  V+  R ++GATNPA +  GT+R D A     N  HGSDSVESA +EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEV 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_ALTMD (Nucleoside diphosphate kinase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKPD V + ++G I  RFE  G  +   K++ + +  AE  Y +   +PFFG+L++++TSGPV+  + EGE  V   R I+GATNPA +A GT+R D A     N +HGSD+ ESA +EIA +F +  I
Sbjct:   10 IKPDAVAKNVIGAIYNRFESAGLRIVASKMIHMSKEQAEGFYAEHKERPFFGALVDFMTSGPVMVQVLEGENAVLANREIMGATNPADAASGTLRSDYAASIDENAVHGSDAPESAAREIAYFFSEEEI 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SHEAM (Nucleoside diphosphate kinase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.019e-25
Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V +  +G I  RFE  G  +   K++ + +  AE  Y + S +PFFG+L+ ++TSGP++  + EGE  V   R I+GATNPAQ+A GT+R D A     N +HGSD++ SA++EIA +F
Sbjct:   10 IKPDAVAKNHIGAIYNRFESAGLKIIAAKMVHLTKEQAEGFYAEHSERPFFGALVSFMTSGPIMVQVLEGENAVLANREIMGATNPAQAARGTLRADYAASIDENAVHGSDALASAEREIAYFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_METPB (Nucleoside diphosphate kinase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.019e-25
Identity = 58/129 (44.96%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            +KPD  +R + G +    E  G  + G + + + R  AEK YE    +PFFG L+E++TSGPVV  + EGE  V   R ++GATNPAQ+A GTIR   A   G N +HGSDS ++A+ EIA +F D  I
Sbjct:   10 LKPDATRRNITGAVNAVIEAAGLRIVGQRRIRMTRAQAEKFYEVHKERPFFGELVEFMTSGPVVVQVLEGENAVAKYREVMGATNPAQAADGTIRKQFAESVGENTVHGSDSADNAKIEIAQFFTDADI 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_METC4 (Nucleoside diphosphate kinase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.019e-25
Identity = 58/129 (44.96%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            +KPD  +R + G +    E  G  + G + + + R  AEK YE    +PFFG L+E++TSGPVV  + EGE  V   R ++GATNPAQ+A GTIR   A   G N +HGSDS ++A+ EIA +F D  I
Sbjct:   10 LKPDATRRNITGAVNAVIEAAGLRIVGQRRIRMTREQAEKFYEVHKERPFFGELVEFMTSGPVVVQVLEGENAVAKYREVMGATNPAQAADGTIRKQFAESVGENTVHGSDSADNARLEIAQFFNDADI 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_CAMHC (Nucleoside diphosphate kinase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.019e-25
Identity = 56/124 (45.16%), Postives = 80/124 (64.52%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V++G++G+II RFE  G  +   K + + +  A + Y     + FF  L++Y+TSGPVV M+ EGE  V   R ++GAT+P ++APGTIR D A     N +HGSDS E+A+ EIA +F
Sbjct:    8 IKPDAVEKGVIGKIIDRFESAGLRIAAAKKIKLSKCDASQFYAIHKERSFFNDLVDYMTSGPVVVMVLEGENAVAKNRELMGATDPKKAAPGTIRADFAESIDANAVHGSDSEENAKNEIAFFF 131          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_ANAMM (Nucleoside diphosphate kinase OS=Anaplasma marginale (strain St. Maries) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.019e-25
Identity = 56/129 (43.41%), Postives = 83/129 (64.34%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            +KPD V+RG++G ++   E  G  +   ++  +    AE  Y    ++PFF SL+ ++TSGPVV  +  GE  VKT R ++GATNP+++APGTIRGDLA     N +HGSDS+E+A+ EI  +F +  I
Sbjct:   10 LKPDVVERGIIGRVLSYIEAAGLRIVAQRMCALSHEQAEAFYAVHKARPFFPSLVGFMTSGPVVVQVLVGESAVKTYRDVMGATNPSEAAPGTIRGDLAESIDANCVHGSDSLENAEWEIKFFFKEHEI 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_ANAMF (Nucleoside diphosphate kinase OS=Anaplasma marginale (strain Florida) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.019e-25
Identity = 56/129 (43.41%), Postives = 83/129 (64.34%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            +KPD V+RG++G ++   E  G  +   ++  +    AE  Y    ++PFF SL+ ++TSGPVV  +  GE  VKT R ++GATNP+++APGTIRGDLA     N +HGSDS+E+A+ EI  +F +  I
Sbjct:   10 LKPDVVERGIIGRVLSYIEAAGLRIVAQRMCALSHEQAEAFYAVHKARPFFPSLVGFMTSGPVVVQVLVGESAVKTYRDVMGATNPSEAAPGTIRGDLAESIDANCVHGSDSLENAEWEIKFFFKEHEI 138          
The following BLAST results are available for this feature:
BLAST of CF835156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_ECO451.546e-2544.19Nucleoside diphosphate kinase OS=Escherichia coli ... [more]
NDK_ECO271.546e-2544.19Nucleoside diphosphate kinase OS=Escherichia coli ... [more]
NDK_ECO241.546e-2544.19Nucleoside diphosphate kinase OS=Escherichia coli ... [more]
NDK_ALTMD1.546e-2543.41Nucleoside diphosphate kinase OS=Alteromonas macle... [more]
NDK_SHEAM2.019e-2544.35Nucleoside diphosphate kinase OS=Shewanella amazon... [more]
NDK_METPB2.019e-2544.96Nucleoside diphosphate kinase OS=Methylobacterium ... [more]
NDK_METC42.019e-2544.96Nucleoside diphosphate kinase OS=Methylobacterium ... [more]
NDK_CAMHC2.019e-2545.16Nucleoside diphosphate kinase OS=Campylobacter hom... [more]
NDK_ANAMM2.019e-2543.41Nucleoside diphosphate kinase OS=Anaplasma margina... [more]
NDK_ANAMF2.019e-2543.41Nucleoside diphosphate kinase OS=Anaplasma margina... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835156 ID=CF835156; Name=CF835156; organism=Citrus sinensis; type=EST; length=692bp
TTTTTTTTTTTTTTAACTAAAAAGTGCAACCATCATGTGCTAACCCTTTA
AAACTCAATTCATAATACAGTCAACAAAAAAGCTTACATATTGTATATGG
CAACCACAAGAATGAAAGCAGCCAACATAACCAGGATTGGTCTCAATTTA
ACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGGA
AATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTCC
TCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTGC
CAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCACT
CTCAACTGAGTCACTTCCATGGATGATATTCCTGCCCGTCACGATAGCCA
AATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCCA
ATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAGC
AACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGCT
TCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGTC
ATAAGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCTCAAATCTGATGAT
GATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGAT
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