CF835156

Overview
NameCF835156
Unique NameCF835156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SHESA (Nucleoside diphosphate kinase OS=Shewanella sp. (strain ANA-3) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = -1 
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V +  +G I  RFE  G  +   K++ + +  AE  Y + S + FFG+L+ ++TSGP++  + EGE  V   R I+GATNPAQ+APGTIR D A     N  HGSD++ESA +EIA +F
Sbjct:   10 IKPDAVAKNHIGAIYNRFETAGLKIVAAKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFAESIDENAAHGSDALESAAREIAYFF 133
[Close]
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SHEON (Nucleoside diphosphate kinase OS=Shewanella oneidensis GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = -1 
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V +  +G I  RFE  G  +   K++ + +  AE  Y + S + FFG+L+ ++TSGP++  + EGE  V   R I+GATNPAQ+APGTIR D A     N  HGSDS+ SA++EIA +F
Sbjct:   10 IKPDAVAKNHIGAIYNRFETAGLKIVAAKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFAQSIDENAAHGSDSLASAEREIAYFF 133
[Close]
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SALTY (Nucleoside diphosphate kinase OS=Salmonella typhimurium GN=ndk PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = -1 
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEV 138
[Close]
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SALTI (Nucleoside diphosphate kinase OS=Salmonella typhi GN=ndk PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = -1 
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEV 138
[Close]
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SALSV (Nucleoside diphosphate kinase OS=Salmonella schwarzengrund (strain CVM19633) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = -1 
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEV 138
[Close]
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SALPK (Nucleoside diphosphate kinase OS=Salmonella paratyphi A (strain AKU_12601) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = -1 
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEV 138
[Close]
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SALPA (Nucleoside diphosphate kinase OS=Salmonella paratyphi A GN=ndk PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = -1 
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEV 138
[Close]
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SALNS (Nucleoside diphosphate kinase OS=Salmonella newport (strain SL254) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = -1 
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEV 138
[Close]
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SALHS (Nucleoside diphosphate kinase OS=Salmonella heidelberg (strain SL476) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = -1 
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEV 138
[Close]
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SALG2 (Nucleoside diphosphate kinase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = -1 
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEV 138
The following BLAST results are available for this feature:
BLAST of CF835156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SHESA2.637e-2545.97Nucleoside diphosphate kinase OS=Shewanella sp. (s... [more]
NDK_SHEON2.637e-2545.97Nucleoside diphosphate kinase OS=Shewanella oneide... [more]
NDK_SALTY2.637e-2543.41Nucleoside diphosphate kinase OS=Salmonella typhim... [more]
NDK_SALTI2.637e-2543.41Nucleoside diphosphate kinase OS=Salmonella typhi ... [more]
NDK_SALSV2.637e-2543.41Nucleoside diphosphate kinase OS=Salmonella schwar... [more]
NDK_SALPK2.637e-2543.41Nucleoside diphosphate kinase OS=Salmonella paraty... [more]
NDK_SALPA2.637e-2543.41Nucleoside diphosphate kinase OS=Salmonella paraty... [more]
NDK_SALNS2.637e-2543.41Nucleoside diphosphate kinase OS=Salmonella newpor... [more]
NDK_SALHS2.637e-2543.41Nucleoside diphosphate kinase OS=Salmonella heidel... [more]
NDK_SALG22.637e-2543.41Nucleoside diphosphate kinase OS=Salmonella gallin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835156 ID=CF835156; Name=CF835156; organism=Citrus sinensis; type=EST; length=692bp
TTTTTTTTTTTTTTAACTAAAAAGTGCAACCATCATGTGCTAACCCTTTA
AAACTCAATTCATAATACAGTCAACAAAAAAGCTTACATATTGTATATGG
CAACCACAAGAATGAAAGCAGCCAACATAACCAGGATTGGTCTCAATTTA
ACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGGA
AATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTCC
TCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTGC
CAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCACT
CTCAACTGAGTCACTTCCATGGATGATATTCCTGCCCGTCACGATAGCCA
AATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCCA
ATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAGC
AACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGCT
TCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGTC
ATAAGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCTCAAATCTGATGAT
GATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGAT
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