CF835156

Overview
NameCF835156
Unique NameCF835156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SALEP (Nucleoside diphosphate kinase OS=Salmonella enteritidis PT4 (strain P125109) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEV 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SALDC (Nucleoside diphosphate kinase OS=Salmonella dublin (strain CT_02021853) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEV 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SALA4 (Nucleoside diphosphate kinase OS=Salmonella agona (strain SL483) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEV 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PSYWF (Nucleoside diphosphate kinase OS=Psychrobacter sp. (strain PRwf-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 57/129 (44.19%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKPD V    +G I  RFE+ G  + G K++ +D   A   Y +   +PF+  L+ ++TSGPVV  + EGE  +   R I+GATNPA++A GTIR D A     N +HGSDS ESA++EIA +F D  +
Sbjct:   10 IKPDAVGGNHIGAIYSRFEEAGLKIVGAKMLHLDDEKAGGFYAEHKERPFYNDLVSFMTSGPVVVSVLEGENAIAKHREIMGATNPAEAAEGTIRKDFASSIDENAVHGSDSAESAKREIAYFFSDNEV 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PARD8 (Nucleoside diphosphate kinase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/129 (43.41%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            +KP  VQRGL+GEI+ RFEKKG  L G+K++ +      +HY  L  KPFF  + + ++  PV+   WEG   +   RT+ G TN   +APGTIRGD ++    NI+H SDS E+A+ E+  +F D  I
Sbjct:    8 LKPCTVQRGLIGEIVTRFEKKGLRLAGMKMVWLTDEILSEHYAHLKEKPFFQRIKDAMSVCPVIVCCWEGVDAIHVVRTLAGTTNGRNAAPGTIRGDYSMSVQENIVHASDSPETAEIELKRFFKDDEI 136          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_COXBU (Nucleoside diphosphate kinase OS=Coxiella burnetii GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = -1
Query:  303 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPIN 692
            IKPD V + ++G+I  RFEK G  +   K+  + +P AEK Y     +PF+  L++++T GPV+  + EGE  +   R I+GATNP ++ PGTIR D A     N +HGSD  E+A++EIA +F PD   N
Sbjct:   10 IKPDAVAKNVIGQIYSRFEKAGLKIIAAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFADSIDANAVHGSDGPETAKEEIAFFFKPDESFN 140          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_COXBR (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = -1
Query:  303 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPIN 692
            IKPD V + ++G+I  RFEK G  +   K+  + +P AEK Y     +PF+  L++++T GPV+  + EGE  +   R I+GATNP ++ PGTIR D A     N +HGSD  E+A++EIA +F PD   N
Sbjct:   10 IKPDAVAKNVIGQIYSRFEKAGLKIIAAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFADSIDANAVHGSDGPETAKEEIAFFFKPDESFN 140          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_COXB2 (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain CbuG_Q212) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = -1
Query:  303 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPIN 692
            IKPD V + ++G+I  RFEK G  +   K+  + +P AEK Y     +PF+  L++++T GPV+  + EGE  +   R I+GATNP ++ PGTIR D A     N +HGSD  E+A++EIA +F PD   N
Sbjct:   10 IKPDAVAKNVIGQIYSRFEKAGLKIIAAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFADSIDANAVHGSDGPETAKEEIAFFFKPDESFN 140          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PSEHT (Nucleoside diphosphate kinase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.444e-25
Identity = 56/126 (44.44%), Postives = 79/126 (62.70%), Query Frame = -1
Query:  315 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 692
            +KPD V +  +G I  RFE  G  +   K++ + +  AE  Y + S +PFFG+L+ ++TSGPV+  + EGE  V   R I+GATNPA +  GT+R D A     N +HGSD+VESA +EIA +F D
Sbjct:   10 VKPDAVAKNHIGAIYNRFETAGLKIVAAKMVHLSQEKAEGFYAEHSERPFFGALVSFMTSGPVMVTVLEGENAVLKNREIMGATNPADALAGTLRADYADSIDENAVHGSDAVESAAREIAYFFAD 135          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_METRJ (Nucleoside diphosphate kinase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.444e-25
Identity = 58/129 (44.96%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            +KPD  +R L G +    E+ G  + G + + + +  AEK YE    +PFFG L+ ++TSGPVV  + EGE  V   R ++GATNPAQ+A GTIR   A   G N +HGSDS E+A+ EIA +F D  I
Sbjct:   10 LKPDATRRNLTGAVNAVIEEAGLRIVGQRRIRMTKEQAEKFYEVHKERPFFGELVTFMTSGPVVVQVLEGENAVAKYREVMGATNPAQAAEGTIRKKFAESVGENTVHGSDSAENAKLEIAQFFKDSDI 138          
The following BLAST results are available for this feature:
BLAST of CF835156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SALEP2.637e-2543.41Nucleoside diphosphate kinase OS=Salmonella enteri... [more]
NDK_SALDC2.637e-2543.41Nucleoside diphosphate kinase OS=Salmonella dublin... [more]
NDK_SALA42.637e-2543.41Nucleoside diphosphate kinase OS=Salmonella agona ... [more]
NDK_PSYWF2.637e-2544.19Nucleoside diphosphate kinase OS=Psychrobacter sp.... [more]
NDK_PARD82.637e-2543.41Nucleoside diphosphate kinase OS=Parabacteroides d... [more]
NDK_COXBU2.637e-2542.75Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_COXBR2.637e-2542.75Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_COXB22.637e-2542.75Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_PSEHT3.444e-2544.44Nucleoside diphosphate kinase OS=Pseudoalteromonas... [more]
NDK_METRJ3.444e-2544.96Nucleoside diphosphate kinase OS=Methylobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835156 ID=CF835156; Name=CF835156; organism=Citrus sinensis; type=EST; length=692bp
TTTTTTTTTTTTTTAACTAAAAAGTGCAACCATCATGTGCTAACCCTTTA
AAACTCAATTCATAATACAGTCAACAAAAAAGCTTACATATTGTATATGG
CAACCACAAGAATGAAAGCAGCCAACATAACCAGGATTGGTCTCAATTTA
ACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGGA
AATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTCC
TCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTGC
CAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCACT
CTCAACTGAGTCACTTCCATGGATGATATTCCTGCCCGTCACGATAGCCA
AATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCCA
ATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAGC
AACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGCT
TCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGTC
ATAAGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCTCAAATCTGATGAT
GATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGAT
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