CF835156

Overview
NameCF835156
Unique NameCF835156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SALCH (Nucleoside diphosphate kinase OS=Salmonella choleraesuis GN=ndk PE=3 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 55/129 (42.64%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP++  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPILVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEV 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PHOLL (Nucleoside diphosphate kinase OS=Photorhabdus luminescens subsp. laumondii GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 55/129 (42.64%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V++  +G I  RFE  GF +   K++ + R  AE  Y +   +PFF  L+E++TSGP+V  + EGE  V+  R ++GATNP  +  GT+R D A     N +HGSD+VESA +EIA +F +  I
Sbjct:   10 IKPNAVKKNAIGAIYARFESAGFKIIAAKMLHLTREQAEGFYAEHKGRPFFDGLVEFMTSGPIVVQVLEGENAVQRHRDLMGATNPDNALAGTLRADYADSFTENAVHGSDAVESANREIAYFFTEDEI 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_METEP (Nucleoside diphosphate kinase OS=Methylobacterium extorquens (strain PA1) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 57/129 (44.19%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            +KPD  +R + G +    E  G  + G + + + R  AEK YE    +PFFG L+E++TSGPVV  + EGE  V   R ++GATNPAQ+A GTIR   A   G N +HGSDS ++A+ EIA +F +  I
Sbjct:   10 LKPDATRRNITGAVNAVIEAAGLRIVGQRRIRMTREQAEKFYEVHKERPFFGELVEFMTSGPVVVQVLEGENAVAKYREVMGATNPAQAADGTIRKQFAESVGENTVHGSDSADNARLEIAQFFNEADI 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_ENTS8 (Nucleoside diphosphate kinase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 57/129 (44.19%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDSVESA +EIA +F +G I
Sbjct:   10 IKPNAVAKNVIGSIFARFESAGFKIIGTKMLHLTVEQARGFYAEHEGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSFTENGTHGSDSVESANREIAYFFGEGEI 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_ENT38 (Nucleoside diphosphate kinase OS=Enterobacter sp. (strain 638) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 56/129 (43.41%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDSVESA +EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFESAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSFTENGTHGSDSVESAAREIAYFFAEGEV 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_DESAH (Nucleoside diphosphate kinase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 54/126 (42.86%), Postives = 83/126 (65.87%), Query Frame = -1
Query:  315 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 692
            IKPDGV++ L+GE++ RF+ +G  +  LK+M + +  A+  Y     +PFF SL E++TSGP+V M+ EG+ V+   R ++GATN  ++  GTIR D A    +N++HGSD+ E+A  EI  +F D
Sbjct:    8 IKPDGVKKNLIGEVVKRFQDQGIHIAALKMMQLTQKQAQGFYAVHRERPFFNSLTEFMTSGPIVVMVLEGDDVIAKNRKLMGATNFKEAEEGTIRRDFATDIEKNVVHGSDAPETAAFEIGYFFND 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_COXBN (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 55/127 (43.31%), Postives = 80/127 (62.99%), Query Frame = -1
Query:  315 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PD 692
            IKPD V + ++G+I  RFEK G  +   K+  + +P AEK Y     +PF+  L++++T GPV+  + EGE  +   R I+GATNP ++ PGTIR D A     N +HGSD  E+A++EIA +F PD
Sbjct:   10 IKPDAVAKNVIGQIYSRFEKAGLKIIAAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFADSIDANAVHGSDGPETAKEEIAFFFKPD 136          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_COXB1 (Nucleoside diphosphate kinase OS=Coxiella burnetii (strain CbuK_Q154) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 55/127 (43.31%), Postives = 80/127 (62.99%), Query Frame = -1
Query:  315 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PD 692
            IKPD V + ++G+I  RFEK G  +   K+  + +P AEK Y     +PF+  L++++T GPV+  + EGE  +   R I+GATNP ++ PGTIR D A     N +HGSD  E+A++EIA +F PD
Sbjct:   10 IKPDAVAKNVIGQIYSRFEKAGLKIISAKMCHLSKPQAEKFYAVHKDRPFYPDLVKFMTQGPVMIQVLEGENAIVKNREIMGATNPKEALPGTIRADFADSIDANAVHGSDGPETAKEEIAFFFKPD 136          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_CAMC5 (Nucleoside diphosphate kinase OS=Campylobacter curvus (strain 525.92) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V++ +VG+II RFE  G  +   K + + +  A+  Y   S +PFF  L+E++TSGPVV M+ EGE  V   R ++GATNP ++A GTIR D A     N +HGSDS+E+A  EI  +F
Sbjct:    8 IKPDAVKKNVVGKIIDRFESNGLRIAAAKKVKLSKCDAKAFYAVHSERPFFNDLVEFMTSGPVVVMVLEGENAVAKNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSLENAINEINFFF 131          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_YERE8 (Nucleoside diphosphate kinase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V +  +G I  RFE  GF +   K++ + +  AE  Y +   +PFF  L+E++TSGPV+  + EGE  V+  R I+GATNP  +  GT+R D A     N +HGSD+VESAQ+EIA +F +  I
Sbjct:   10 IKPNAVAKNNIGAIYARFESAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPVMIQVLEGENAVQRHRDIMGATNPDNALAGTLRADFADSFTENAVHGSDAVESAQREIAYFFSENEI 138          
The following BLAST results are available for this feature:
BLAST of CF835156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SALCH5.874e-2542.64Nucleoside diphosphate kinase OS=Salmonella choler... [more]
NDK_PHOLL5.874e-2542.64Nucleoside diphosphate kinase OS=Photorhabdus lumi... [more]
NDK_METEP5.874e-2544.19Nucleoside diphosphate kinase OS=Methylobacterium ... [more]
NDK_ENTS85.874e-2544.19Nucleoside diphosphate kinase OS=Enterobacter saka... [more]
NDK_ENT385.874e-2543.41Nucleoside diphosphate kinase OS=Enterobacter sp. ... [more]
NDK_DESAH5.874e-2542.86Nucleoside diphosphate kinase OS=Desulfobacterium ... [more]
NDK_COXBN5.874e-2543.31Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_COXB15.874e-2543.31Nucleoside diphosphate kinase OS=Coxiella burnetii... [more]
NDK_CAMC55.874e-2545.97Nucleoside diphosphate kinase OS=Campylobacter cur... [more]
NDK_YERE87.672e-2543.41Nucleoside diphosphate kinase OS=Yersinia enteroco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835156 ID=CF835156; Name=CF835156; organism=Citrus sinensis; type=EST; length=692bp
TTTTTTTTTTTTTTAACTAAAAAGTGCAACCATCATGTGCTAACCCTTTA
AAACTCAATTCATAATACAGTCAACAAAAAAGCTTACATATTGTATATGG
CAACCACAAGAATGAAAGCAGCCAACATAACCAGGATTGGTCTCAATTTA
ACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGGA
AATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTCC
TCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTGC
CAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCACT
CTCAACTGAGTCACTTCCATGGATGATATTCCTGCCCGTCACGATAGCCA
AATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCCA
ATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAGC
AACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGCT
TCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGTC
ATAAGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCTCAAATCTGATGAT
GATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGAT
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