CF835156

Overview
NameCF835156
Unique NameCF835156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_VIBSL (Nucleoside diphosphate kinase OS=Vibrio splendidus (strain LGP32) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 57/129 (44.19%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            +KPD V+R LVGEI  R EK G  +   K++++    A   Y +   K FFG L E++TSGP++  + EGE  +   R ++G TNP ++A GTIR D AI    N +HGSDS ESA +EI  +FP+  I
Sbjct:   10 VKPDAVKRNLVGEIYHRIEKAGLQIIAAKMVSLTEAQASGFYAEHEGKEFFGPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAACGTIRADYAISMRYNSVHGSDSPESAAREIEFFFPESEI 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PSEU5 (Nucleoside diphosphate kinase OS=Pseudomonas stutzeri (strain A1501) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V + ++GEI  RFEK G  +   K++ +    A   Y + S + FF  L+ ++TSGPV+  + EGE  V   R ++GATNP ++APGTIR D A+    N +HGSDS  SA +EIA +F
Sbjct:   10 IKPDAVAKNVIGEITTRFEKAGLRVVASKMVQLSEREAAGFYAEHSERGFFKDLVAFMTSGPVIVQVLEGENAVAKNRELMGATNPKEAAPGTIRADFAVSIDENAVHGSDSEASAAREIAYFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PSEE4 (Nucleoside diphosphate kinase OS=Pseudomonas entomophila (strain L48) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 54/124 (43.55%), Postives = 79/124 (63.71%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V + ++G+I  RFE+ G  +   K+  + +  AE  Y + S++ FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++APGTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   10 IKPDAVAKNVIGKITTRFEEAGLKIVASKIKQLSKAEAEGFYAEHSARGFFGDLVAFMTSGPVVVQVLEGENAIALNRELMGATNPKEAAPGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_CAMJE (Nucleoside diphosphate kinase OS=Campylobacter jejuni GN=ndk PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKPD V++G++G+I+ RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  I EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:    8 IKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIEFFFKPNEI 136          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_BORA1 (Nucleoside diphosphate kinase OS=Bordetella avium (strain 197N) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 51/126 (40.48%), Postives = 80/126 (63.49%), Query Frame = -1
Query:  315 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 692
            IKPD V + ++G+I+ RFE+ G  +   +L  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:   10 IKPDAVAKNVIGQIVARFEQAGLKVIAARLQQLSRADAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGENAIQVNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SALAR (Nucleoside diphosphate kinase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 55/129 (42.64%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V + ++G I  RFE  GF + G +++ +    A   Y +   KPFF  L+E++TSGP+V  + E E  V+  R ++GATNPA +  GT+R D A     N  HGSDS+ESAQ+EIA +F +G +
Sbjct:   10 IKPNAVAKNVIGSIFARFEAAGFRIVGTRMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSFTENGTHGSDSLESAQREIAFFFGEGEV 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PROMH (Nucleoside diphosphate kinase OS=Proteus mirabilis (strain HI4320) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 54/129 (41.86%), Postives = 81/129 (62.79%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKP+ V++ ++G I  RFE  GFS+   K++ + R  AE  YE+   +PFF  L+E++TSGP++  + EGE  ++  R ++GATNP  +  GT+R D A     N +HGSDS  SA +EIA +F +  I
Sbjct:   10 IKPNAVKKNVIGAIYNRFESAGFSIVAAKMLHLTREQAEGFYEEHKGRPFFDGLVEFMTSGPIMVQVLEGENAIQRHRDLMGATNPDNALAGTLRADYADSFTENAVHGSDSEASAAREIAYFFTENEI 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_METCA (Nucleoside diphosphate kinase OS=Methylococcus capsulatus GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 54/124 (43.55%), Postives = 75/124 (60.48%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V + ++GEI  RFEK G  +   K+  + R  AE  Y     +PFF  L+ ++ SGPV+  + EGE  +   R ++GATNP  +APGTIR D A+    N +HGSD  E+A +EIA +F
Sbjct:   10 IKPDAVAKNVIGEIYSRFEKAGLRIVAAKMAQLSREQAEGFYAVHRERPFFNDLVSFMISGPVMIQVLEGENAIAKNRELMGATNPRDAAPGTIRADFAVSIDENAVHGSDGPETAAQEIAYFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_CAMJJ (Nucleoside diphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 55/129 (42.64%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKPD V++G++G+I+ RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  + EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:    8 IKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIEFFFKPNEI 136          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_CAMJD (Nucleoside diphosphate kinase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 55/129 (42.64%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKPD V++G++G+I+ RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  + EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:    8 IKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIEFFFKPNEI 136          
The following BLAST results are available for this feature:
BLAST of CF835156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_VIBSL7.672e-2544.19Nucleoside diphosphate kinase OS=Vibrio splendidus... [more]
NDK_PSEU57.672e-2544.35Nucleoside diphosphate kinase OS=Pseudomonas stutz... [more]
NDK_PSEE47.672e-2543.55Nucleoside diphosphate kinase OS=Pseudomonas entom... [more]
NDK_CAMJE7.672e-2543.41Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_BORA17.672e-2540.48Nucleoside diphosphate kinase OS=Bordetella avium ... [more]
NDK_SALAR1.002e-2442.64Nucleoside diphosphate kinase OS=Salmonella arizon... [more]
NDK_PROMH1.002e-2441.86Nucleoside diphosphate kinase OS=Proteus mirabilis... [more]
NDK_METCA1.002e-2443.55Nucleoside diphosphate kinase OS=Methylococcus cap... [more]
NDK_CAMJJ1.002e-2442.64Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_CAMJD1.002e-2442.64Nucleoside diphosphate kinase OS=Campylobacter jej... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835156 ID=CF835156; Name=CF835156; organism=Citrus sinensis; type=EST; length=692bp
TTTTTTTTTTTTTTAACTAAAAAGTGCAACCATCATGTGCTAACCCTTTA
AAACTCAATTCATAATACAGTCAACAAAAAAGCTTACATATTGTATATGG
CAACCACAAGAATGAAAGCAGCCAACATAACCAGGATTGGTCTCAATTTA
ACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGGA
AATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTCC
TCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTGC
CAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCACT
CTCAACTGAGTCACTTCCATGGATGATATTCCTGCCCGTCACGATAGCCA
AATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCCA
ATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAGC
AACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGCT
TCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGTC
ATAAGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCTCAAATCTGATGAT
GATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGAT
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