CF835156

Overview
NameCF835156
Unique NameCF835156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_CAMJ8 (Nucleoside diphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 55/129 (42.64%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKPD V++G++G+I+ RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  + EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:    8 IKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIDFFFKPNEI 136          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_CAMC1 (Nucleoside diphosphate kinase OS=Campylobacter concisus (strain 13826) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V++ +VG+II RFE  G  +   K + + +  A+  Y     +PFF  L++++ SGPVV M+ EGE  V   R ++GATNP ++APGTIR D A     N +HGSDS+E+A  EI  +F
Sbjct:    8 IKPDAVKKNVVGKIIDRFESNGLRIAAAKKIKLSKCDAKAFYAVHKDRPFFNDLVDFMVSGPVVVMVLEGENAVAKNRELMGATNPKEAAPGTIRADFADSIDANAVHGSDSLENAVNEINFFF 131          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_BORPE (Nucleoside diphosphate kinase OS=Bordetella pertussis GN=ndk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 51/126 (40.48%), Postives = 80/126 (63.49%), Query Frame = -1
Query:  315 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 692
            IKPD V + +VG+I+ RFE+ G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:   10 IKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_BORPA (Nucleoside diphosphate kinase OS=Bordetella parapertussis GN=ndk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 51/126 (40.48%), Postives = 80/126 (63.49%), Query Frame = -1
Query:  315 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 692
            IKPD V + +VG+I+ RFE+ G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:   10 IKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_BORBR (Nucleoside diphosphate kinase OS=Bordetella bronchiseptica GN=ndk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 51/126 (40.48%), Postives = 80/126 (63.49%), Query Frame = -1
Query:  315 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 692
            IKPD V + +VG+I+ RFE+ G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:   10 IKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_SHEPW (Nucleoside diphosphate kinase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.709e-24
Identity = 56/124 (45.16%), Postives = 78/124 (62.90%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V +  +G I  RFE  G  +   K++ + +  AE  Y + S +PFFG+L+ ++TSGP++    EGE  V   R I+GATNPA++A GTIR D A     N  HGSDSV SA++E+A +F
Sbjct:   10 IKPDAVAKNHIGAIYNRFETAGLKIIASKMVHLSQEQAEGFYAEHSERPFFGALVAFMTSGPIMVQTLEGENAVLAHREILGATNPAEAAEGTIRADFAESIDENAAHGSDSVASAEREVAYFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK1_PARUW (Nucleoside diphosphate kinase 1 OS=Protochlamydia amoebophila (strain UWE25) GN=ndk1 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.709e-24
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = -1
Query:  315 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PD 692
            IKPD VQ   +GEII RFE+ G  +  +K+ T+ +  A K Y     +PF+  L+ +++SGPVV M+ EG   +   R ++GAT+P ++  GT+R D A    RN +HGSDS E+A++E+  +F PD
Sbjct:   10 IKPDAVQNNYIGEIISRFEQAGLKIAAIKMTTLTKDQASKFYAIHKDRPFYNDLVNFMSSGPVVVMVLEGNQAIAKNRELMGATDPKKAEKGTLRADFAESMSRNAVHGSDSSETAEEEVLFFFKPD 136          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PHEZH (Nucleoside diphosphate kinase OS=Phenylobacterium zucineum (strain HLK1) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24
Identity = 59/129 (45.74%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKPD  +R L G++    E  G  +   K + + R  AEK YE    +PFFG L+E++TS PVV  + EGE  V   R ++GATNPAQ+A GTIR   A   G N +HGSDS+E+A+ EIA +F +  I
Sbjct:    9 IKPDATRRNLTGKVNAVIEDAGLRIVAQKRIRMSRAQAEKFYEVHKERPFFGELVEFMTSAPVVVQVLEGENAVARYREVMGATNPAQAADGTIRKLYAESVGENSVHGSDSLENAKIEIAQFFTEDEI 137          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PERMH (Nucleoside diphosphate kinase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24
Identity = 54/124 (43.55%), Postives = 79/124 (63.71%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            +KPD V+R L G+II   ++KGF L  LK + + +  A++ Y     +PF+  L E+++SGP+VAM+WEGE  +   R I+GATNP ++  GT+R       G N +HGSDS ESA+ EI  +F
Sbjct:   10 VKPDAVRRNLEGKIIAHVQEKGFKLVALKKLKLTKEQAQQFYIVHKDRPFYDELCEFMSSGPIVAMVWEGENAISRIREIMGATNPEEAEEGTLRKLYGTNVGENAVHGSDSPESAKVEIPFFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_FERNB (Nucleoside diphosphate kinase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24
Identity = 54/129 (41.86%), Postives = 86/129 (66.67%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            +KP+ V+RGLVGEI+ RFE++G  + GLK + + R  AEK YE    K F+  L+E++ SGP+VA+I E    ++  R I+GAT+P ++  G+IRG+ A+   +N+IH SDS ++  +E +++F    I
Sbjct:    8 LKPNAVRRGLVGEILKRFEQRGIKIVGLKFLKMTREQAEKLYEPHKGKQFYDELLEFMLSGPIVAVILEAPRCLELVRHIVGATDPLKAEAGSIRGEFALTVTKNLIHASDSTDNFIRESSIFFSPSEI 136          
The following BLAST results are available for this feature:
BLAST of CF835156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_CAMJ81.309e-2442.64Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_CAMC11.309e-2444.35Nucleoside diphosphate kinase OS=Campylobacter con... [more]
NDK_BORPE1.309e-2440.48Nucleoside diphosphate kinase OS=Bordetella pertus... [more]
NDK_BORPA1.309e-2440.48Nucleoside diphosphate kinase OS=Bordetella parape... [more]
NDK_BORBR1.309e-2440.48Nucleoside diphosphate kinase OS=Bordetella bronch... [more]
NDK_SHEPW1.709e-2445.16Nucleoside diphosphate kinase OS=Shewanella piezot... [more]
NDK1_PARUW1.709e-2441.73Nucleoside diphosphate kinase 1 OS=Protochlamydia ... [more]
NDK_PHEZH2.232e-2445.74Nucleoside diphosphate kinase OS=Phenylobacterium ... [more]
NDK_PERMH2.232e-2443.55Nucleoside diphosphate kinase OS=Persephonella mar... [more]
NDK_FERNB2.232e-2441.86Nucleoside diphosphate kinase OS=Fervidobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835156 ID=CF835156; Name=CF835156; organism=Citrus sinensis; type=EST; length=692bp
TTTTTTTTTTTTTTAACTAAAAAGTGCAACCATCATGTGCTAACCCTTTA
AAACTCAATTCATAATACAGTCAACAAAAAAGCTTACATATTGTATATGG
CAACCACAAGAATGAAAGCAGCCAACATAACCAGGATTGGTCTCAATTTA
ACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGGA
AATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTCC
TCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTGC
CAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCACT
CTCAACTGAGTCACTTCCATGGATGATATTCCTGCCCGTCACGATAGCCA
AATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCCA
ATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAGC
AACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGCT
TCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGTC
ATAAGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCTCAAATCTGATGAT
GATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGAT
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