CF835156

Overview
NameCF835156
Unique NameCF835156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_XANAC (Nucleoside diphosphate kinase OS=Xanthomonas axonopodis pv. citri GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 57/124 (45.97%), Postives = 74/124 (59.68%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V + ++GEI  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:   10 IKPDAVAKNVIGEIYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_VEREI (Nucleoside diphosphate kinase OS=Verminephrobacter eiseniae (strain EF01-2) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 52/125 (41.60%), Postives = 78/125 (62.40%), Query Frame = -1
Query:  318 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 692
            IKPD V + ++G+I  RFE  G  +   +++ + RP AE+ Y     +PFF  L+E++ SGPV+  + EGE  V   R ++GAT+P ++  GTIR D A     N +HGSD+ E+AQ E+A +FP
Sbjct:   10 IKPDAVAKNVIGQIYARFEAAGLKIVAARMVHLARPEAERFYAVHKERPFFKDLVEFMISGPVMVQVLEGENAVLKNRELMGATDPKKAQTGTIRADFADSIDANAVHGSDAAETAQAEVAFFFP 134          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_STRMK (Nucleoside diphosphate kinase OS=Stenotrophomonas maltophilia (strain K279a) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 58/124 (46.77%), Postives = 75/124 (60.48%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V + ++GEI  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP ++APGTIR D A     N  HGSDSVE+A  EIA +F
Sbjct:   10 IKPDAVAKNVIGEIYARFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVLAHRDLLGATNPKEAAPGTIRADFAESIDANAAHGSDSVENAAIEIAYFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_STRM5 (Nucleoside diphosphate kinase OS=Stenotrophomonas maltophilia (strain R551-3) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 58/124 (46.77%), Postives = 75/124 (60.48%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V + ++GEI  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP ++APGTIR D A     N  HGSDSVE+A  EIA +F
Sbjct:   10 IKPDAVAKNVIGEIYARFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVLAHRDLLGATNPKEAAPGTIRADFAESIDANAAHGSDSVENAAIEIAYFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_BDEBA (Nucleoside diphosphate kinase OS=Bdellovibrio bacteriovorus GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 51/124 (41.13%), Postives = 79/124 (63.71%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKP+ +++  +G+I+  FE  G  +   K+  +    AE+ Y +  ++PFFG L+ ++TSGPV+ M  +GEG V   R I+GAT+P ++ PGT+R       G N +HGSDS ESA +E+AL+F
Sbjct:   10 IKPNAMKKNAIGDIVSMFEANGLKIAAAKITVLTTAKAEEFYAEHKARPFFGELVSFMTSGPVMLMCLQGEGAVLKNREIMGATDPKKANPGTVRAKFGDNVGENAVHGSDSPESAARELALFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_ALISL (Nucleoside diphosphate kinase OS=Aliivibrio salmonicida (strain LFI1238) GN=ndk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 55/129 (42.64%), Postives = 82/129 (63.57%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            +KPD V+R L+G I  R EK G  +   K++++ +  A+  Y +   K FF +L+EY+TSGPV+  + EGE V+   R ++G TNP ++A G++R D AI    N +HGSDS ESA +EIA +F +  I
Sbjct:   10 VKPDAVKRNLIGAIYRRIEKTGMQVVAAKMLSLTKEQAQGFYAEHEGKEFFDALVEYMTSGPVMVQVLEGESVITRYRELMGKTNPDEAACGSLRSDYAISMRYNSVHGSDSPESAAREIAYFFVEDEI 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_YERP3 (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ndk PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 54/124 (43.55%), Postives = 78/124 (62.90%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKP+ V    +G I  RFE  GF++   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D A     N +HGSD+VESAQ+EIA +F
Sbjct:   10 IKPNAVANNNIGAIYARFESAGFNIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFADSFTANAVHGSDAVESAQREIAYFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PSYCK (Nucleoside diphosphate kinase OS=Psychrobacter cryohalolentis (strain K5) GN=ndk PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V    +G I  RFEK G  +   K+M +D   A   Y + + +PF+  L+ ++TSGPV+  + EGE  + T R I+GATNP  +A GTIR D A     N +HGSDS ESA +EI+ +F
Sbjct:   10 IKPDAVAGNNIGAIYDRFEKSGLKIVAAKMMQLDDKKAGGFYAEHAERPFYNDLVSFMTSGPVLVSVLEGENAIATHRDIMGATNPKDAAEGTIRADFASSIDENAVHGSDSAESAAREISYFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_BRUSU (Nucleoside diphosphate kinase OS=Brucella suis GN=ndk PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 54/124 (43.55%), Postives = 75/124 (60.48%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD  +R L G II + E+ G  +   K + + R  AE  Y     +PFFG L+E+++SGP V  + EGE  +   R ++GATNPA +  GTIR   A+  G N +HGSD+ E+A +EIA WF
Sbjct:   10 IKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENSVHGSDAPETAAEEIAYWF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_BRUSI (Nucleoside diphosphate kinase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=ndk PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 54/124 (43.55%), Postives = 75/124 (60.48%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD  +R L G II + E+ G  +   K + + R  AE  Y     +PFFG L+E+++SGP V  + EGE  +   R ++GATNPA +  GTIR   A+  G N +HGSD+ E+A +EIA WF
Sbjct:   10 IKPDATRRNLTGAIIAKLEEAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANADEGTIRKTFALSIGENSVHGSDAPETAAEEIAYWF 133          
The following BLAST results are available for this feature:
BLAST of CF835156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_XANAC2.915e-2445.97Nucleoside diphosphate kinase OS=Xanthomonas axono... [more]
NDK_VEREI2.915e-2441.60Nucleoside diphosphate kinase OS=Verminephrobacter... [more]
NDK_STRMK2.915e-2446.77Nucleoside diphosphate kinase OS=Stenotrophomonas ... [more]
NDK_STRM52.915e-2446.77Nucleoside diphosphate kinase OS=Stenotrophomonas ... [more]
NDK_BDEBA2.915e-2441.13Nucleoside diphosphate kinase OS=Bdellovibrio bact... [more]
NDK_ALISL2.915e-2442.64Nucleoside diphosphate kinase OS=Aliivibrio salmon... [more]
NDK_YERP33.808e-2443.55Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]
NDK_PSYCK3.808e-2444.35Nucleoside diphosphate kinase OS=Psychrobacter cry... [more]
NDK_BRUSU3.808e-2443.55Nucleoside diphosphate kinase OS=Brucella suis GN=... [more]
NDK_BRUSI3.808e-2443.55Nucleoside diphosphate kinase OS=Brucella suis (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835156 ID=CF835156; Name=CF835156; organism=Citrus sinensis; type=EST; length=692bp
TTTTTTTTTTTTTTAACTAAAAAGTGCAACCATCATGTGCTAACCCTTTA
AAACTCAATTCATAATACAGTCAACAAAAAAGCTTACATATTGTATATGG
CAACCACAAGAATGAAAGCAGCCAACATAACCAGGATTGGTCTCAATTTA
ACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGGA
AATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTCC
TCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTGC
CAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCACT
CTCAACTGAGTCACTTCCATGGATGATATTCCTGCCCGTCACGATAGCCA
AATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCCA
ATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAGC
AACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGCT
TCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGTC
ATAAGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCTCAAATCTGATGAT
GATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGAT
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