CF835156

Overview
NameCF835156
Unique NameCF835156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:153..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_ACIAC (Nucleoside diphosphate kinase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.483e-24
Identity = 50/125 (40.00%), Postives = 78/125 (62.40%), Query Frame = -1
Query:  318 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 692
            IKPD V + ++G+I  RFE  G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV+  + EGE  +   R ++GAT+P ++APGTIR D A     N +HGSD+ E+AQ E++ +FP
Sbjct:   10 IKPDAVAKNVIGQIYARFEAAGLKIAAARMAHLSRQEAEQFYAVHKERPFFKDLVDFMISGPVMIQVLEGENAILKNRELMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAQVEVSFFFP 134          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_WOLWR (Nucleoside diphosphate kinase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=ndk PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.108e-23
Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = -1
Query:  315 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 692
            +KPD V+  + G+I    E  G  +   K+M + +  AE  YE    +PFFG L+E++TSG V+  +  GE  V   R I+GATNP Q+  GTIRGD A     N +HGSDS+E+A+KEIA +F +
Sbjct:   10 LKPDAVKNNITGKINSYIESSGLKIIAQKMMLLTKKQAELFYEIHKDRPFFGELVEFMTSGSVIVQVLVGENAVSKYRQIMGATNPKQADKGTIRGDFADDISENRVHGSDSLENARKEIAFFFAE 135          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_WOLTR (Nucleoside diphosphate kinase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=ndk PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.108e-23
Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = -1
Query:  315 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 692
            +KPD V+  ++G I    EK G  +   K+M + +  AE  Y     +PFFG L+E++TSGPV+  +  GE  +   R I+GAT+P Q+  GTIRGD A     N +HGSDS+E+A KEIA +F +
Sbjct:   10 LKPDTVKNNIIGNINSYIEKSGLRIIAQKMMLLTKKQAELFYAIHKDRPFFGGLVEFMTSGPVIVQVLVGENAISKYRQIMGATDPKQADKGTIRGDFADDVNENRVHGSDSLENAHKEIAFFFAE 135          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_VIBVY (Nucleoside diphosphate kinase OS=Vibrio vulnificus (strain YJ016) GN=ndk PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.108e-23
Identity = 55/129 (42.64%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKPD V+R L+GEI  R EK G  +   K++ ++   A   Y +   K FF +L E++TSGP++  + EGE  +   R ++G TNP ++A GTIR D A+    N +HGSDS  SA +EIA +FP+  I
Sbjct:   10 IKPDAVERNLIGEIYHRIEKAGLRIIAAKMVHLNDEQASGFYAEHEGKEFFPALKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAACGTIRADYALSMRHNSVHGSDSPASAAREIAFFFPESEI 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_VIBVU (Nucleoside diphosphate kinase OS=Vibrio vulnificus GN=ndk PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.108e-23
Identity = 55/129 (42.64%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  306 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 692
            IKPD V+R L+GEI  R EK G  +   K++ ++   A   Y +   K FF +L E++TSGP++  + EGE  +   R ++G TNP ++A GTIR D A+    N +HGSDS  SA +EIA +FP+  I
Sbjct:   10 IKPDAVERNLIGEIYHRIEKAGLRIIAAKMVHLNDEQASGFYAEHEGKEFFPALKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAACGTIRADYALSMRHNSVHGSDSPASAAREIAFFFPESEI 138          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_VARPS (Nucleoside diphosphate kinase OS=Variovorax paradoxus (strain S110) GN=ndk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.447e-23
Identity = 51/124 (41.13%), Postives = 77/124 (62.10%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V + ++G+I+ RFE  G  +   KL+ + R  AE+ Y     +PFF  L++++ SGPV   + EGE  +   R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +F
Sbjct:   10 IKPDAVAKNVIGKIVSRFEAAGLKIVAAKLVHLSRNEAEQFYSVHKERPFFKDLVDFMISGPVFVQVLEGENAIAKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAANEVAFFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PSEAE (Nucleoside diphosphate kinase OS=Pseudomonas aeruginosa GN=ndk PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.447e-23
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V + ++GEI+ RFEK G  +   K++ +    A   Y +   +PFF  L+ ++TSGPVV  + EGE  +   R ++GAT+P ++  GTIR D A+    N +HGSDS  SA +EIA +F
Sbjct:   10 IKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGSDSEASAAREIAYFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PSEAB (Nucleoside diphosphate kinase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ndk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.447e-23
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V + ++GEI+ RFEK G  +   K++ +    A   Y +   +PFF  L+ ++TSGPVV  + EGE  +   R ++GAT+P ++  GTIR D A+    N +HGSDS  SA +EIA +F
Sbjct:   10 IKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGSDSEASAAREIAYFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PSEA8 (Nucleoside diphosphate kinase OS=Pseudomonas aeruginosa (strain LESB58) GN=ndk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.447e-23
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V + ++GEI+ RFEK G  +   K++ +    A   Y +   +PFF  L+ ++TSGPVV  + EGE  +   R ++GAT+P ++  GTIR D A+    N +HGSDS  SA +EIA +F
Sbjct:   10 IKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGSDSEASAAREIAYFF 133          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PSEA7 (Nucleoside diphosphate kinase OS=Pseudomonas aeruginosa (strain PA7) GN=ndk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.447e-23
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = -1
Query:  321 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 692
            IKPD V + ++GEI+ RFEK G  +   K++ +    A   Y +   +PFF  L+ ++TSGPVV  + EGE  +   R ++GAT+P ++  GTIR D A+    N +HGSDS  SA +EIA +F
Sbjct:   10 IKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGSDSEASAAREIAYFF 133          
The following BLAST results are available for this feature:
BLAST of CF835156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_ACIAC8.483e-2440.00Nucleoside diphosphate kinase OS=Acidovorax avenae... [more]
NDK_WOLWR1.108e-2343.65Nucleoside diphosphate kinase OS=Wolbachia sp. sub... [more]
NDK_WOLTR1.108e-2342.86Nucleoside diphosphate kinase OS=Wolbachia sp. sub... [more]
NDK_VIBVY1.108e-2342.64Nucleoside diphosphate kinase OS=Vibrio vulnificus... [more]
NDK_VIBVU1.108e-2342.64Nucleoside diphosphate kinase OS=Vibrio vulnificus... [more]
NDK_VARPS1.447e-2341.13Nucleoside diphosphate kinase OS=Variovorax parado... [more]
NDK_PSEAE1.447e-2341.94Nucleoside diphosphate kinase OS=Pseudomonas aerug... [more]
NDK_PSEAB1.447e-2341.94Nucleoside diphosphate kinase OS=Pseudomonas aerug... [more]
NDK_PSEA81.447e-2341.94Nucleoside diphosphate kinase OS=Pseudomonas aerug... [more]
NDK_PSEA71.447e-2341.94Nucleoside diphosphate kinase OS=Pseudomonas aerug... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835156 ID=CF835156; Name=CF835156; organism=Citrus sinensis; type=EST; length=692bp
TTTTTTTTTTTTTTAACTAAAAAGTGCAACCATCATGTGCTAACCCTTTA
AAACTCAATTCATAATACAGTCAACAAAAAAGCTTACATATTGTATATGG
CAACCACAAGAATGAAAGCAGCCAACATAACCAGGATTGGTCTCAATTTA
ACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGGA
AATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTCC
TCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTGC
CAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCACT
CTCAACTGAGTCACTTCCATGGATGATATTCCTGCCCGTCACGATAGCCA
AATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCCA
ATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAGC
AACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGCT
TCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGTC
ATAAGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCTCAAATCTGATGAT
GATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGAT
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