CF835156

Overview
NameCF835156
Unique NameCF835156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:153..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_BACCR (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ndk PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.178e-41
Identity = 77/141 (54.61%), Postives = 104/141 (73.76%), Query Frame = -1
Query:  273 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 692
            +KPDGVQR  +GEI+ RFEKKGF L G KLM V    A +HY +   KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EIA++F +   +++   ++ WIY
Sbjct:    8 VKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHKEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIAIFFKEEELVDYSKLMNEWIY 148          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_BACSU (Nucleoside diphosphate kinase OS=Bacillus subtilis GN=ndk PE=1 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 2.625e-41
Identity = 78/141 (55.32%), Postives = 104/141 (73.76%), Query Frame = -1
Query:  273 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 692
            +KPDGVQR L+G+I+ RFE+KG  L G KLM V    AEKHY +   KPFFG L+E+ITSGPV AM+WEGE V++  R +IG TNP ++ PGTIRGD  +  G+NIIHGSDS+ESA++EI ++F +   +++Q  +  WIY
Sbjct:    9 VKPDGVQRQLIGDILSRFERKGLQLAGAKLMRVTEQMAEKHYAEHQGKPFFGELVEFITSGPVFAMVWEGENVIEVTRQLIGKTNPKEALPGTIRGDYGMFVGKNIIHGSDSLESAEREINIFFKNEELVSYQQLMAGWIY 149          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_BACHK (Nucleoside diphosphate kinase OS=Bacillus thuringiensis subsp. konkukian GN=ndk PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.625e-41
Identity = 76/141 (53.90%), Postives = 104/141 (73.76%), Query Frame = -1
Query:  273 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 692
            +KPDGVQR  +GEI+ RFEKKGF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:    8 VKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_BACCZ (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ZK / E33L) GN=ndk PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.625e-41
Identity = 76/141 (53.90%), Postives = 104/141 (73.76%), Query Frame = -1
Query:  273 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 692
            +KPDGVQR  +GEI+ RFEKKGF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:    8 VKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_BACAN (Nucleoside diphosphate kinase OS=Bacillus anthracis GN=ndk PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.625e-41
Identity = 76/141 (53.90%), Postives = 104/141 (73.76%), Query Frame = -1
Query:  273 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 692
            +KPDGVQR  +GEI+ RFEKKGF L G KLM V    A +HY + + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++APGTIRGD  +   +NIIHGSDS+ESA++EI ++F +   +++   ++ WIY
Sbjct:    8 VKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_BACHD (Nucleoside diphosphate kinase OS=Bacillus halodurans GN=ndk PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.428e-41
Identity = 78/140 (55.71%), Postives = 103/140 (73.57%), Query Frame = -1
Query:  276 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWI 692
            IKPDGVQR L+GEI+ RFEKKGF+L G KLMTV +  AE HY +   +PFFG L+++ITSGPV AM+WEGE V+ T R ++GATNPA + PGTIRGD  +    N+IHGSDS ESA++EI ++F    +N +   ++ W+
Sbjct:    8 IKPDGVQRNLIGEIVSRFEKKGFTLIGAKLMTVTKEQAETHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGATNPADAEPGTIRGDFGVQVAMNVIHGSDSPESAKREIDIFFDSSELNEYDKVVNRWV 147          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_DESRM (Nucleoside diphosphate kinase OS=Desulfotomaculum reducens (strain MI-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.477e-41
Identity = 78/142 (54.93%), Postives = 109/142 (76.76%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 692
            +KPDGVQRGL+G+II +FE+KG+ + GLK+M + R  AE+HY + + KPFF  L+++ITSGPVVAM+ EG+ VV T R ++GATNP ++APGTIR    +  GRNIIHGSDS+ESAQ+EI ++F  +  I++  ++  WIYE
Sbjct:    8 VKPDGVQRGLIGQIISKFEQKGYKIVGLKMMQISREVAERHYGEHAGKPFFNGLVDFITSGPVVAMVIEGKDVVTTAREMMGATNPLKAAPGTIRATFGVDVGRNIIHGSDSLESAQREIGIFFKSEELIDYDRAIDTWIYE 149          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_BRUMA (Nucleoside diphosphate kinase OS=Brugia malayi GN=NDK PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.477e-41
Identity = 76/142 (53.52%), Postives = 102/142 (71.83%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 692
            IKPD VQRGL+G+I  RFE++G+ L  +K++   +   E HY++L  KPFF  L+ Y++SGPV+AM+WEG  VVK  R ++GATNP  S PGTIRGD +I TGRNI+HGSDS+ SA++EI  WF P+    W S+   W+YE
Sbjct:   12 IKPDAVQRGLIGKIFERFEQRGYKLVAMKMLKATKSHLEIHYQELQGKPFFNDLVGYMSSGPVIAMVWEGLDVVKQARQMLGATNPLNSMPGTIRGDFSIQTGRNIVHGSDSLPSAEREITHWFKPEELCEWSSATATWVYE 153          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_PROM1 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=ndk PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.847e-41
Identity = 80/142 (56.34%), Postives = 101/142 (71.13%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 692
            IKPDGVQRGL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+++ITSGPVVAM+WEGEGV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGSD  ++A  EI LWF +   ++W  S   W  E
Sbjct:   10 IKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVVAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGSDTAVFEINLWFQENELVDWNPSDQAWRVE 151          
BLAST of CF835156 vs. ExPASy Swiss-Prot
Match: NDK_STAHJ (Nucleoside diphosphate kinase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ndk PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.637e-41
Identity = 80/142 (56.34%), Postives = 103/142 (72.54%), Query Frame = -1
Query:  270 IKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 692
            IKPD +QR LVGEII R E+KG  L G KLMTV +  AE+HY + + KPF+G LI +ITS PV AM+ EGE  V   R IIG TNP+++ PG+IRGDL +  GRN+IHGSDSVESAQ+EI LWF +  + ++++    W+YE
Sbjct:    8 IKPDAIQRNLVGEIISRIERKGLKLVGAKLMTVPQALAEEHYSEHTDKPFYGKLISFITSAPVFAMVVEGEDAVDVSRHIIGKTNPSEATPGSIRGDLGLTVGRNVIHGSDSVESAQREINLWFKEEELSSYEAPRDTWLYE 149          
The following BLAST results are available for this feature:
BLAST of CF835156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BACCR1.178e-4154.61Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACSU2.625e-4155.32Nucleoside diphosphate kinase OS=Bacillus subtilis... [more]
NDK_BACHK2.625e-4153.90Nucleoside diphosphate kinase OS=Bacillus thuringi... [more]
NDK_BACCZ2.625e-4153.90Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACAN2.625e-4153.90Nucleoside diphosphate kinase OS=Bacillus anthraci... [more]
NDK_BACHD3.428e-4155.71Nucleoside diphosphate kinase OS=Bacillus halodura... [more]
NDK_DESRM4.477e-4154.93Nucleoside diphosphate kinase OS=Desulfotomaculum ... [more]
NDK_BRUMA4.477e-4153.52Nucleoside diphosphate kinase OS=Brugia malayi GN=... [more]
NDK_PROM15.847e-4156.34Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_STAHJ7.637e-4156.34Nucleoside diphosphate kinase OS=Staphylococcus ha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835156 ID=CF835156; Name=CF835156; organism=Citrus sinensis; type=EST; length=692bp
TTTTTTTTTTTTTTAACTAAAAAGTGCAACCATCATGTGCTAACCCTTTA
AAACTCAATTCATAATACAGTCAACAAAAAAGCTTACATATTGTATATGG
CAACCACAAGAATGAAAGCAGCCAACATAACCAGGATTGGTCTCAATTTA
ACTCAATACTTCATAACAGTTCACCAACAAGGAGTAACCATAAATAAGGA
AATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAACAATTAGGCTCC
TCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGAAGGCTGCTCTGC
CAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTCTTTCTGGGCACT
CTCAACTGAGTCACTTCCATGGATGATATTCCTGCCCGTCACGATAGCCA
AATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGGTTGGTGGCTCCA
ATAATAGTGCGGCCAGTCTTAACAACACCTTCACCCTCCCAAATCATAGC
AACAACAGGACCAGAGGTAATGTACTCAATCAGAGAACCAAAGAAAGGCT
TCGATGACAAATCCTCATAGTGCTTCTCAGCAAAAGGGCGGTCCACAGTC
ATAAGCTTCAAACCCTTCAAGGAGAAACCCTTCTTCTCAAATCTGATGAT
GATTTCACCAACAAGGCCTCTTTGGACCCCATCGGGCTTGAT
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