CF835159

Overview
NameCF835159
Unique NameCF835159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7759 contig Csv1_Contig7759:307..1055. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D_RABIT (Elongation factor 1-delta OS=Oryctolagus cuniculus GN=EEF1D PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.408e-24
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = -1 
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            +LLDVKPWDDETDM +LE  VRSVQ++GL+WGASKL PVGYGI+KLQI   + DD V  D L+EE + +    E+VQS DI AFNKI
Sbjct:  197 ILLDVKPWDDETDMARLEACVRSVQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEITK--FEEHVQSVDIAAFNKI 280
[Close]
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D_RAT (Elongation factor 1-delta OS=Rattus norvegicus GN=Eef1d PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = -1 
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI   + DD V  D L+EE + +    E+VQS DI AFNKI
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEITK--FEEHVQSVDIAAFNKI 281
[Close]
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D_MACFA (Elongation factor 1-delta OS=Macaca fascicularis GN=EEF1D PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = -1 
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI   + DD V  D L+EE + +    E+VQS DI AFNKI
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEITK--FEEHVQSVDIAAFNKI 281
[Close]
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D_HUMAN (Elongation factor 1-delta OS=Homo sapiens GN=EEF1D PE=1 SV=5)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = -1 
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI   + DD V  D L+EE + +    E+VQS DI AFNKI
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEITK--FEEHVQSVDIAAFNKI 281
[Close]
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D_ARTSA (Elongation factor 1-delta OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = -1 
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            +LLD+KPWDDETDM  +E  VRS+ M+GL+WGASKL PV +G+KKLQI   + DD VSVD L+E+    E   +YVQS DI AFNKI
Sbjct:  154 ILLDIKPWDDETDMGAMEREVRSIAMDGLIWGASKLVPVAFGVKKLQISCVVEDDKVSVDELVEK---IEAFEDYVQSVDIAAFNKI 237
[Close]
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D_BOVIN (Elongation factor 1-delta OS=Bos taurus GN=EEF1D PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.675e-23
Identity = 56/87 (64.37%), Postives = 65/87 (74.71%), Query Frame = -1 
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            +LLDVKPWDDETDM +LE  VRSVQ++GL+WG+SKL PVGYGI+KLQI   + DD V  D L EE    E   E+VQS DI AFNKI
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVVEDDKVGTDQLEEEITKFE---EHVQSVDIAAFNKI 280
[Close]
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D_MOUSE (Elongation factor 1-delta OS=Mus musculus GN=Eef1d PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23
Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = -1 
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            +LLDVKPWDDETDM +LE  VRS+Q++GL+WGASKL PVGYGI+KLQI   + DD V  D L+EE + +    E+VQS DI AF+KI
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEITK--FEEHVQSVDIAAFDKI 281
[Close]
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1B2_CAEEL (Probable elongation factor 1-beta/1-delta 2 OS=Caenorhabditis elegans GN=Y41E3.10 PE=1 SV=4)

HSP 1 Score: 108.612 bits (270), Expect = 3.731e-23
Identity = 53/87 (60.92%), Postives = 69/87 (79.31%), Query Frame = -1 
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            V+LDVKPWDDETD+ ++E+ VRS++M+GL+WG +KL P+GYGIKKLQI+  I D  VSVD LIE+  +     ++VQS DIVAFNKI
Sbjct:  179 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEK--ITGDFEDHVQSVDIVAFNKI 263
[Close]
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1B1_CAEEL (Probable elongation factor 1-beta/1-delta 1 OS=Caenorhabditis elegans GN=F54H12.6 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.731e-23
Identity = 53/87 (60.92%), Postives = 69/87 (79.31%), Query Frame = -1 
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            V+LDVKPWDDETD+ ++E+ VRS++M+GL+WG +KL P+GYGIKKLQI+  I D  VSVD LIE+  +     ++VQS DIVAFNKI
Sbjct:  129 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEK--ITGDFEDHVQSVDIVAFNKI 213
[Close]
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1B_ARTSA (Elongation factor 1-beta OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 8.312e-23
Identity = 52/87 (59.77%), Postives = 68/87 (78.16%), Query Frame = -1 
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            V+LD+KPWDDETDM ++E+ VRSVQM+GL+WGA+KL P+ YGIKKL IM  + DD VS+D L +E + E    ++VQS DI AFNK+
Sbjct:  124 VILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVVEDDKVSIDEL-QEKISE--FEDFVQSVDIAAFNKV 207
The following BLAST results are available for this feature:
BLAST of CF835159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1D_RABIT4.408e-2464.37Elongation factor 1-delta OS=Oryctolagus cuniculus... [more]
EF1D_RAT7.518e-2463.22Elongation factor 1-delta OS=Rattus norvegicus GN=... [more]
EF1D_MACFA7.518e-2463.22Elongation factor 1-delta OS=Macaca fascicularis G... [more]
EF1D_HUMAN7.518e-2463.22Elongation factor 1-delta OS=Homo sapiens GN=EEF1D... [more]
EF1D_ARTSA9.819e-2460.92Elongation factor 1-delta OS=Artemia salina PE=1 S... [more]
EF1D_BOVIN1.675e-2364.37Elongation factor 1-delta OS=Bos taurus GN=EEF1D P... [more]
EF1D_MOUSE2.857e-2362.07Elongation factor 1-delta OS=Mus musculus GN=Eef1d... [more]
EF1B2_CAEEL3.731e-2360.92Probable elongation factor 1-beta/1-delta 2 OS=Cae... [more]
EF1B1_CAEEL3.731e-2360.92Probable elongation factor 1-beta/1-delta 1 OS=Cae... [more]
EF1B_ARTSA8.312e-2359.77Elongation factor 1-beta OS=Artemia salina PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835159 ID=CF835159; Name=CF835159; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTTTTTTTTTTCGCCACAGTAAAAAAACTCCAAAGAGAGAGCCTC
TTTAGAAGAACAAATCCATAATGGAACACACAAGACTCCTGAAACAAAAA
TAAATATTTTAAAATAAATATCACTTTGCTATGATCATTATCCAAGACAA
AATCCCCGGAAGCCTCTCTAGCACCCACTTTGCCAAAGGATCCACAAATT
ATATTTTGTTGAAGGCTACAATATCACAGCTCTGGACATATTCATTAATT
GGTTCTTCCAGCAGGTGTTCCTCAATGAGGGTGTCAACAGACACCAAGTC
ATCCACAATTGTAAGCATTATTTGCAATTTCTTGATACCATATCCAACAG
GTGCAAGTTTGCTGGCTCCCCAGAGTAATCCTTCCATCTGAACACTTCTT
ACTGCTTCCTCAAGCTTCTTCATGTCAGTCTCATCATCCCAAGGCTTCAC
ATCCAATAGAACTGATGACTTGCCAGATTCTTTCTTTTTGGCTGATGCTT
TGACGGAAGCTGCGCGTGCCTCGGCAGCCTTCTTTTCCTCTTCTGTCTCC
TCACCAAATAGATCCACATCATCGTCGTCATCATCAGGAGCTGCTGCCTT
TGAGTCAGCTACCGGGGGAGTAGCAACAGGAGCAGATCCCTCTACAGTGA
CACCAGAGCCTTCACCAGTAACGCCAGAGATCCTTAAAAGTGCATCAATA
TGCTTGTACCACCGAGACACATTGACATATTCAGATGATGGTGCTTTTGA
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